Journal: Medical Mycology

Article Title: On the lineage of Aspergillus fumigatus isolates in common laboratory use

doi: 10.1093/mmy/myaa075

Figure Lengend Snippet: Af293 and derivative thereof. Diagram depicting provenance and scientific use of Af293 strains. The uridine/uracil requirements and the genomic organization of the pyrG locus is indicated for each isolate within this lineage.

Article Snippet: A CEA17 derivative, harboring a functional copy of the A. niger pyrG ( An12g03570 , named AFUB_047540 in the annotation of the A1163 genome), and designated A1163 was subsequently sequenced at the J. Craig Venter Institute, in collaboration with Celera Genomics.

Techniques:

Journal: Medical Mycology

Article Title: On the lineage of Aspergillus fumigatus isolates in common laboratory use

doi: 10.1093/mmy/myaa075

Figure Lengend Snippet: CEA10 and derivatives thereof. Diagram depicting provenance and scientific use of CEA10 strains. The uridine/uracil requirements and the genomic organization of the pyrG and akuB KU80 loci is indicated for each isolate within this lineage.

Article Snippet: A CEA17 derivative, harboring a functional copy of the A. niger pyrG ( An12g03570 , named AFUB_047540 in the annotation of the A1163 genome), and designated A1163 was subsequently sequenced at the J. Craig Venter Institute, in collaboration with Celera Genomics.

Techniques:

Journal: Medical Mycology

Article Title: On the lineage of Aspergillus fumigatus isolates in common laboratory use

doi: 10.1093/mmy/myaa075

Figure Lengend Snippet: Alignment of the DNA sequences of A. fumigatus pyrG gene from CEA10 and CEA17 and A. niger pyrG as present in A1163. The asterisk indicates the C nucleotide in position 1413 that has changed into a T in the CEA17 strain, leading to the transition from glutamine to a premature stop codon. This nucleotide change can be used as a diagnostic marker to differentiate strains within the CEA10 lineage. A. fumigatus pyrG and A. niger pyrG share 77.16% identity. As A. niger pyrG is ectopically integrated in the genome of A. fumigatus A1163, the presence of this gene can be used as a diagnostic marker to differentiate A. fumigatus A1163 from the rest of the isolates within the CEA10 lineage.

Article Snippet: A CEA17 derivative, harboring a functional copy of the A. niger pyrG ( An12g03570 , named AFUB_047540 in the annotation of the A1163 genome), and designated A1163 was subsequently sequenced at the J. Craig Venter Institute, in collaboration with Celera Genomics.

Techniques: Diagnostic Assay, Marker

Journal: Medical Mycology

Article Title: On the lineage of Aspergillus fumigatus isolates in common laboratory use

doi: 10.1093/mmy/myaa075

Figure Lengend Snippet: Table of isolates.

Article Snippet: A CEA17 derivative, harboring a functional copy of the A. niger pyrG ( An12g03570 , named AFUB_047540 in the annotation of the A1163 genome), and designated A1163 was subsequently sequenced at the J. Craig Venter Institute, in collaboration with Celera Genomics.

Techniques: Sequencing, Infection, Isolation

Journal: Microorganisms

Article Title: Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems

doi: 10.3390/microorganisms12030470

Figure Lengend Snippet: Microbial consortia with fungal species for removal of heavy metals.

Article Snippet: Interestingly, Cr removal was maximum in the consortium of A. niveus and A. flavus (93%), while in the combination of A. niger with A. flavus or A. niveus cells it decreased by 3%.

Techniques: Concentration Assay

Journal: Microorganisms

Article Title: Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems

doi: 10.3390/microorganisms12030470

Figure Lengend Snippet: Microbial consortia with fungal species for decolorization of dyes.

Article Snippet: Interestingly, Cr removal was maximum in the consortium of A. niveus and A. flavus (93%), while in the combination of A. niger with A. flavus or A. niveus cells it decreased by 3%.

Techniques:

Journal: Microorganisms

Article Title: Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems

doi: 10.3390/microorganisms12030470

Figure Lengend Snippet: Microbial consortia with fungal species for degradation of synthetic polymers.

Article Snippet: Interestingly, Cr removal was maximum in the consortium of A. niveus and A. flavus (93%), while in the combination of A. niger with A. flavus or A. niveus cells it decreased by 3%.

Techniques: Isolation, Suspension, Polymer, Starch

Journal: Microorganisms

Article Title: Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems

doi: 10.3390/microorganisms12030470

Figure Lengend Snippet: Microbial consortia with fungal species for degradation of pesticides.

Article Snippet: Interestingly, Cr removal was maximum in the consortium of A. niveus and A. flavus (93%), while in the combination of A. niger with A. flavus or A. niveus cells it decreased by 3%.

Techniques: Pesticides, Concentration Assay

Journal: Microorganisms

Article Title: Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems

doi: 10.3390/microorganisms12030470

Figure Lengend Snippet: Microbial consortia with fungal species for degradation of PAHs.

Article Snippet: Interestingly, Cr removal was maximum in the consortium of A. niveus and A. flavus (93%), while in the combination of A. niger with A. flavus or A. niveus cells it decreased by 3%.

Techniques: Concentration Assay, Genetically Modified

Journal: Microorganisms

Article Title: Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems

doi: 10.3390/microorganisms12030470

Figure Lengend Snippet: Microbial consortia with fungal species for degradation of pharmaceutical pollutants.

Article Snippet: Interestingly, Cr removal was maximum in the consortium of A. niveus and A. flavus (93%), while in the combination of A. niger with A. flavus or A. niveus cells it decreased by 3%.

Techniques: Concentration Assay

Journal: Microorganisms

Article Title: Using Fungi in Artificial Microbial Consortia to Solve Bioremediation Problems

doi: 10.3390/microorganisms12030470

Figure Lengend Snippet: Microbial consortia with fungal species for degradation of various pollutants not mentioned in Table 1 , Table 2 , Table 3 , Table 4 , Table 5 and Table 6 .

Article Snippet: Interestingly, Cr removal was maximum in the consortium of A. niveus and A. flavus (93%), while in the combination of A. niger with A. flavus or A. niveus cells it decreased by 3%.

Techniques: Concentration Assay

Journal: Genome Biology

Article Title: Systemic analysis of the response of Aspergillus niger to ambient pH

doi: 10.1186/gb-2009-10-5-r47

Figure Lengend Snippet: Metabolite profiles under cultivations of Aspergillus niger at three levels of pH. For each pH value is shown three replicates, from which biomass was sampled for transcriptome analysis. Sample times are shown with white vertical lines. Note that the pH shown in the left column is the pH at the time of sampling for transcriptome analysis. All cultures were inoculated at pH 2.5 and increased at the beginning of the growth phase if needed (see Methods for details).

Article Snippet: The strain used was A. niger BO-1, obtained from Novozymes A/S (Kalundborg, Denmark) and maintained as frozen spore suspensions at -80°C in 20% glycerol.

Techniques: Sampling

Journal: Genome Biology

Article Title: Systemic analysis of the response of Aspergillus niger to ambient pH

doi: 10.1186/gb-2009-10-5-r47

Figure Lengend Snippet: Sugar, acid, and biomass concentrations for A. niger cultivations at three levels of pH

Article Snippet: The strain used was A. niger BO-1, obtained from Novozymes A/S (Kalundborg, Denmark) and maintained as frozen spore suspensions at -80°C in 20% glycerol.

Techniques: