Databases Search Results


cd8 bx026  (Akoya Biosciences)
97
Akoya Biosciences cd8 bx026
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Cd8 Bx026, supplied by Akoya Biosciences, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/PhenoCycler+Antibody+Database/pmc10983045-4-0-4
Average 97 stars, based on 1 article reviews
cd8 bx026 - by Bioz Stars, 2026-08
97/100 stars
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matlab ml toolbox  (MathWorks Inc)
96
MathWorks Inc matlab ml toolbox
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Matlab Ml Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/Database+Toolbox/pmc12955058-210-0-0
Average 96 stars, based on 1 article reviews
matlab ml toolbox - by Bioz Stars, 2026-08
96/100 stars
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data point  (Eppendorf AG)
94
Eppendorf AG data point
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Data Point, supplied by Eppendorf AG, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/Database+Modification/10__1128_slash_jvi__78__23__12951___12963__2004-86-6-16
Average 94 stars, based on 1 article reviews
data point - by Bioz Stars, 2026-08
94/100 stars
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immunogenicity  (Immune Epitope Database & Analysis Resource)
86
Immune Epitope Database & Analysis Resource immunogenicity
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Immunogenicity, supplied by Immune Epitope Database & Analysis Resource, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/tool/pm39832278-192-15-8
Average 86 stars, based on 1 article reviews
immunogenicity - by Bioz Stars, 2026-08
86/100 stars
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epitopes  (Immune Epitope Database & Analysis Resource)
86
Immune Epitope Database & Analysis Resource epitopes
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Epitopes, supplied by Immune Epitope Database & Analysis Resource, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/epitopes+experimental/10__4103_slash_apjtm__apjtm_746_24-80-14-25
Average 86 stars, based on 1 article reviews
epitopes - by Bioz Stars, 2026-08
86/100 stars
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codon  (Kazusa Genome Technologies)
86
Kazusa Genome Technologies codon
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Codon, supplied by Kazusa Genome Technologies, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/codon+database+usage/pm42049770-220-28-32
Average 86 stars, based on 1 article reviews
codon - by Bioz Stars, 2026-08
86/100 stars
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saccharomyces cerevisiae up00002311 protein sequence database  (Thermo Fisher)
92
Thermo Fisher saccharomyces cerevisiae up00002311 protein sequence database
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Saccharomyces Cerevisiae Up00002311 Protein Sequence Database, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/Saccharomyces+cerevisiae+UP00002311+protein+sequence+database/pmc10792236-506-16-11
Average 92 stars, based on 1 article reviews
saccharomyces cerevisiae up00002311 protein sequence database - by Bioz Stars, 2026-08
92/100 stars
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s ship gfp transgenes  (Transnetyx)
94
Transnetyx s ship gfp transgenes
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
S Ship Gfp Transgenes, supplied by Transnetyx, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/Colony/pm30564749-169-6-11
Average 94 stars, based on 1 article reviews
s ship gfp transgenes - by Bioz Stars, 2026-08
94/100 stars
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ecoinvent v3 9 1 database  (Ecoinvent Association)
86
Ecoinvent Association ecoinvent v3 9 1 database
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Ecoinvent V3 9 1 Database, supplied by Ecoinvent Association, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/8+database+ecoinvent+v3/pm39032747-123-32-32
Average 86 stars, based on 1 article reviews
ecoinvent v3 9 1 database - by Bioz Stars, 2026-08
86/100 stars
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t cell epitopes  (Immune Epitope Database & Analysis Resource)
86
Immune Epitope Database & Analysis Resource t cell epitopes
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
T Cell Epitopes, supplied by Immune Epitope Database & Analysis Resource, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/b+cell+epitopes/10__22207_slash_jpam__19__3__54-71-53-57
Average 86 stars, based on 1 article reviews
t cell epitopes - by Bioz Stars, 2026-08
86/100 stars
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analysis resource  (Immune Epitope Database & Analysis Resource)
86
Immune Epitope Database & Analysis Resource analysis resource
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Analysis Resource, supplied by Immune Epitope Database & Analysis Resource, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/analysis+resource/pm40965217-43-16-18
Average 86 stars, based on 1 article reviews
analysis resource - by Bioz Stars, 2026-08
86/100 stars
  Buy from Supplier
paper gene expression omnibus  (Jackson Laboratory)
86
Jackson Laboratory paper gene expression omnibus
FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and <t>CD8</t> (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.
Paper Gene Expression Omnibus, supplied by Jackson Laboratory, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/Databases/database+expression+gene/pm36323311-281-227-252
Average 86 stars, based on 1 article reviews
paper gene expression omnibus - by Bioz Stars, 2026-08
86/100 stars
  Buy from Supplier

Image Search Results


FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and CD8 (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.

Journal: Cell Reports Medicine

Article Title: Follicular lymphoma B cells exhibit heterogeneous transcriptional states with associated somatic alterations and tumor microenvironments

doi: 10.1016/j.xcrm.2024.101443

Figure Lengend Snippet: FL B cell states shape their local immune profile (A) Uniform manifold approximation and projection of immune metaclusters from individually profiled FL patient CyTOF samples (n = 60). Clusters identified using Phenograph and are colored by manual annotation. (B) Heatmap of mean surface protein expression in each identified cluster mentioned in (A). Cluster identities listed next to their coordinating colors from (A). (C) Boxplot of immune content as percentage of live cells in each sample by their B cell group. (D) Correlation plot between the difference in CMI vs. INFM state coefficients (positive = higher CMI, negative = higher INFM) and the non-B immune cell percentage (% of live cells). A standard linear regression line is displayed with 95% CIs, along with ( r ) Pearson correlation, and representative p value. (E) (Left) Heatmap of correlation matrix between cell cluster abundances in all of the samples, depicting cellular communities (black boxes). Cell values from Pearson correlation. Dendrogram from correlation distance. (Right) Heatmap of Pearson correlation between cell abundance and sample B cell group state. Pearson p values are printed where p < 0.1. (F) Heatmap of Spearman correlation between single-sample gene set scoring, using SingScore of published GC stromal gene sets, and B cell group states (n = 54). Pearson p values are printed in cells where p < 0.1. (G) CODEX multiplexed immunofluorescence analysis of CD21 (white), CD20 (blue), Ki-67 (yellow), CD4 (green), and CD8 (magenta) on 1 sample from each B cell group. (Left) Baseline cell type abundance in each sample (% of live) from CyTOF. (Right) First 3 panels, stitched images equal to 10× magnification with 500-μm scale. White box delineating the magnified view in panel 4 of follicle and interfollicular region, with 200-μm scale.

Article Snippet: CD8-BX026 (C8/144B)—Atto 550-RX026 , Akoya , Catalog: 4250012, RRID: AB_2915960.

Techniques: Expressing, Immunofluorescence

Journal: Cell Reports Medicine

Article Title: Follicular lymphoma B cells exhibit heterogeneous transcriptional states with associated somatic alterations and tumor microenvironments

doi: 10.1016/j.xcrm.2024.101443

Figure Lengend Snippet:

Article Snippet: CD8-BX026 (C8/144B)—Atto 550-RX026 , Akoya , Catalog: 4250012, RRID: AB_2915960.

Techniques: Cell Isolation, Software, Multiplex Assay