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Classification and general features of <t> Paenibacillus </t> antibioticophila strain GD11 T according to MIGS recommendations <xref ref-type= [48] ." width="250" height="auto" />
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Classification and general features of Paenibacillus antibioticophila strain GD11 T according to MIGS recommendations <xref ref-type= [48] ." width="100%" height="100%">

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Classification and general features of Paenibacillus antibioticophila strain GD11 T according to MIGS recommendations [48] .

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques: Bacteria, Staining, Isolation

Phylogenetic tree showing position of Paenibacillus antibioticophila strain GD11 T relative to other type strains within Paenibacillaceae . The strains and their corresponding GenBank accession numbers for 16S rRNA genes are (type = T ): P. sanguinis strain 2301083 T , AY323612 ; P. macerans strain ATCC 8244 T , AB073196 ; P. timonensis strain 2301032 T , AY323612 ; P. barengoltzii strain SAFN-016 T , AY167814 ; P. antibioticophila strain GD11 T , KC158472 ; P. puldeungensis strain CAU 9324 T , GU187433 ; P. motobuensis strain MC10 T , AY741810 ; P. senegalensis strain JC66 T , JF824808 ; P. zanthoxyli strain JH29 T , DQ471303 ; P. sabinae strain T27 T , DQ338444 ; P. lautus strain ATCC 43898 T , AB073188 ; P. terrae strain AM141 T , AF391124 ; P. polymyxa strain ATCC 842 T , D16276 ; P. xylanilyticus strain XIL14 T , AY427832 ; P. massiliensis strain 2301065 T , AY323608 ; P. panacisoli strain Gsoil 1411 T , AB245384 ; Bacillus subtilis ATCC 6051 T , AJ276351 . Sequences were aligned using CLUSTALW, and phylogenetic inferences were obtained using the maximum likelihood method within MEGA6. Numbers at nodes are percentages of bootstrap values obtained by repeating analysis 1000 times to generate majority consensus tree. Bacillus subtilis ATCC 6051 T ( AJ276351 ) was used as outgroup. Scale bar = 1% nucleotide sequence divergence.

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Phylogenetic tree showing position of Paenibacillus antibioticophila strain GD11 T relative to other type strains within Paenibacillaceae . The strains and their corresponding GenBank accession numbers for 16S rRNA genes are (type = T ): P. sanguinis strain 2301083 T , AY323612 ; P. macerans strain ATCC 8244 T , AB073196 ; P. timonensis strain 2301032 T , AY323612 ; P. barengoltzii strain SAFN-016 T , AY167814 ; P. antibioticophila strain GD11 T , KC158472 ; P. puldeungensis strain CAU 9324 T , GU187433 ; P. motobuensis strain MC10 T , AY741810 ; P. senegalensis strain JC66 T , JF824808 ; P. zanthoxyli strain JH29 T , DQ471303 ; P. sabinae strain T27 T , DQ338444 ; P. lautus strain ATCC 43898 T , AB073188 ; P. terrae strain AM141 T , AF391124 ; P. polymyxa strain ATCC 842 T , D16276 ; P. xylanilyticus strain XIL14 T , AY427832 ; P. massiliensis strain 2301065 T , AY323608 ; P. panacisoli strain Gsoil 1411 T , AB245384 ; Bacillus subtilis ATCC 6051 T , AJ276351 . Sequences were aligned using CLUSTALW, and phylogenetic inferences were obtained using the maximum likelihood method within MEGA6. Numbers at nodes are percentages of bootstrap values obtained by repeating analysis 1000 times to generate majority consensus tree. Bacillus subtilis ATCC 6051 T ( AJ276351 ) was used as outgroup. Scale bar = 1% nucleotide sequence divergence.

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques: Sequencing

Gram staining of Paenibacillus antibioticophila strain GD11 T (= DSM 28228 = CSUR P1358).

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Gram staining of Paenibacillus antibioticophila strain GD11 T (= DSM 28228 = CSUR P1358).

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques: Staining

Differential characteristics of Paenibacillus antibioticophila strain GD11 T (data from this study) with P. sanguinis strain 2301083 T , P. zanthoxyli strain JH29 T , P. puldeungensis strain CAU 9324 T , P. terrae strain AM141 T

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Differential characteristics of Paenibacillus antibioticophila strain GD11 T (data from this study) with P. sanguinis strain 2301083 T , P. zanthoxyli strain JH29 T , P. puldeungensis strain CAU 9324 T , P. terrae strain AM141 T

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques: Staining, Algae

Reference mass spectrum from Paenibacillus antibioticophila strain GD11 T (= DSM 28228 = CSUR P1358). Spectra from 16 individual colonies were compared and reference spectrum generated.

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Reference mass spectrum from Paenibacillus antibioticophila strain GD11 T (= DSM 28228 = CSUR P1358). Spectra from 16 individual colonies were compared and reference spectrum generated.

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques: Generated

Gel view comparing Paenibacillus antibioticophila strain GD11 T . Gel view displays raw spectra of loaded spectrum files arranged in pseudo gel-like look. The x -axis records m/z value. Left y -axis displays running spectrum number originating from subsequent spectra loading. Peak intensity is expressed by greyscale scheme code. Color bar and right y -axis indicating relation between color peak are displayed, with peak intensity in arbitrary units. Displayed species are indicated at left, with GD11 T highlighted in blue.

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Gel view comparing Paenibacillus antibioticophila strain GD11 T . Gel view displays raw spectra of loaded spectrum files arranged in pseudo gel-like look. The x -axis records m/z value. Left y -axis displays running spectrum number originating from subsequent spectra loading. Peak intensity is expressed by greyscale scheme code. Color bar and right y -axis indicating relation between color peak are displayed, with peak intensity in arbitrary units. Displayed species are indicated at left, with GD11 T highlighted in blue.

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques:

Distribution of functional classes of predicted genes of Paenibacillus chromosomes according to clusters of orthologous groups of proteins. PA, P . antibioticophila ; PB, P . barengoltzii ; PM, P . massiliensis ; PP, P . polymyxa ; PPA, P . panacisoli ; PS, P . sanguinis ; PSE, P . senegalensis ; PT, P . terrae ; PZ, P. zanthoxyli .

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Distribution of functional classes of predicted genes of Paenibacillus chromosomes according to clusters of orthologous groups of proteins. PA, P . antibioticophila ; PB, P . barengoltzii ; PM, P . massiliensis ; PP, P . polymyxa ; PPA, P . panacisoli ; PS, P . sanguinis ; PSE, P . senegalensis ; PT, P . terrae ; PZ, P. zanthoxyli .

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques: Functional Assay

Characteristics associated to phages in Paenibacillus antibioticophila strain GD11 T

Journal: New Microbes and New Infections

Article Title: Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11 T , the type strain of Paenibacillus antibioticophila

doi: 10.1016/j.nmni.2015.10.006

Figure Lengend Snippet: Characteristics associated to phages in Paenibacillus antibioticophila strain GD11 T

Article Snippet: The genome of P. antibioticophila strain GD11 T was compared to each of Paenibacillus barengoltzii strain G22 (GenBank accession no. ASSZ00000000.1 ), Paenibacillus massiliensis strain 2301065 T (GenBank accession no. ARIL00000000.1 ), Paenibacillus panacisoli strain DSM 21345 (GenBank accession no. AUFO00000000.1 ), Paenibacillus polymyxa strain ATCC 842 T (GenBank accession no. AFOX00000000.1 ), Paenibacillus sanguinis strain 2301083 T (GenBank accession no. ARGO00000000.1 ), Paenibacillus senegalensis strain JC66 T (GenBank accession no. CAES00000000.1 ), Paenibacillus terrae strain HP l -003 (GenBank accession no. CP003107.1 ) and Paenibacillus zanthoxyli strain JH29 T (GenBank accession no. ASSD00000000.1 ).

Techniques: