3d structural database Search Results


3d structural database  (TimTec LLC)
90
TimTec LLC 3d structural database
3d Structural Database, supplied by TimTec LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+structural+database/10__1128_slash_aac__00955___13-138-1-10?v=TimTec+LLC
Average 90 stars, based on 1 article reviews
3d structural database - by Bioz Stars, 2026-07
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3d protein structures  (Immune Epitope Database & Analysis Resource)
86
Immune Epitope Database & Analysis Resource 3d protein structures
Predicted linear and conformational B-cell epitopes mapped <t>onto</t> <t>HMGB1</t> (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the <t>3D</t> structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.
3d Protein Structures, supplied by Immune Epitope Database & Analysis Resource, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/3d+structural+database/pmc12682578-49-26-8?v=Immune+Epitope+Database+%26+Analysis+Resource
Average 86 stars, based on 1 article reviews
3d protein structures - by Bioz Stars, 2026-07
86/100 stars
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Image Search Results


Predicted linear and conformational B-cell epitopes mapped onto HMGB1 (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the 3D structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.

Journal: Frontiers in Endocrinology

Article Title: Discovery and serological validation of DAMP-derived B-cell epitopes as diagnostic biomarkers for diabetic nephropathy

doi: 10.3389/fendo.2025.1652922

Figure Lengend Snippet: Predicted linear and conformational B-cell epitopes mapped onto HMGB1 (A) , S100A8 (B) , and S100A9 (C) structures. Epitopes predicted by BepiPred 2.0, ABCpred, and ElliPro are visualized on the 3D structures of HMGB1 (PDB: 2YRQ) and S100A8/S100A9 (PDB: 1XK4). Overlapping linear and discontinuous epitope regions are highlighted, with key residues labeled to illustrate spatial clustering.

Article Snippet: Conformational epitopes were predicted using ElliPro via The Immune Epitope Database (IEDB) server with default settings (minimum score = 0.5; maximum distance = 0.6 Å), employing 3D protein structures obtained from the Protein Data Bank (HMGB1: 2YRQ; S100A8/A9: 1XK4) ( https://www.rcsb.org/ ).

Techniques: Labeling