x vesicatoria strain 1111  (ATCC)

Journal: BMC Genomics

Article Title: Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli

doi: 10.1186/s12864-019-5600-x

Figure Lengend Snippet: Phylogeny of Australian and Genbank genomes of a ) X. euvesicatoria , b ) X. perforans and c ) X. vesicatoria based on core genome alignments generated by the Roary program. Australian strains are indicated by BRIP and DAR collection prefixes and highlighted; all others are public genomes of related species. Type strains are indicated in bold and branch support values are displayed to clade level (measured with the Shimodaira-Hasegawa test within FastTree). Branch length is indicated by the scale bar

Article Snippet: Australian X. vesicatoria strains cluster in three clades with overseas strains, distant from the type strain ATCC 35937.

Techniques: Generated

Journal: BMC Genomics

Article Title: Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli

doi: 10.1186/s12864-019-5600-x

Figure Lengend Snippet: Pie plots of gene content in core, soft core, shell and cloud genomes describing the pan genome for X. euvesicatoria, X. perforans, X. vesicatoria and X. gardneri . The core genome is defined as genes present in 99–100% of strains; soft core, shell and cloud genomes are defined as 95–99%, 15–95% and 0–15% respectively. Number of genomes in each pan genome is indicated as ‘n’

Article Snippet: Australian X. vesicatoria strains cluster in three clades with overseas strains, distant from the type strain ATCC 35937.

Techniques:

Journal: BMC Genomics

Article Title: Genomic sequence analysis reveals diversity of Australian Xanthomonas species associated with bacterial leaf spot of tomato, capsicum and chilli

doi: 10.1186/s12864-019-5600-x

Figure Lengend Snippet: Presence/ absence matrix with dendrogram of effectors identified in 147 Xanthomonas genomes. Effector presence is indicated by colour as described in the legend (presence = blue, absence = red). Names and Genbank numbers of identified effectors are listed vertically. Species groupings as determined by phylogeny and ANI are indicated by the horizontal coloured bar as follows: X. euvesicatoria ; orange, X. perforans ; pink, X. vesicatoria ; blue, X. gardneri ; dark green, X. arboricola ; green, Xanthomonas sp.; light green

Article Snippet: Australian X. vesicatoria strains cluster in three clades with overseas strains, distant from the type strain ATCC 35937.

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Journal: Frontiers in Bioengineering and Biotechnology

Article Title: Systems Biology of Microbial Exopolysaccharides Production

doi: 10.3389/fbioe.2015.00200

Figure Lengend Snippet: Gene clusters of significantly important microbial EPSs biosynthesis . (A) : Xanthan biosynthesis by Xanthomonas campestris pv. campestris ATCC 33913, (B) : Levan biosynthesis by Bacillus subtilis subsp. subtilis 6051-HGW (bsh), (C) : Dextran biosynthesis by Streptococcus intermedius JTH08 (sie). Conserved operan informations were obtained from ODB Operon Database (Okuda and Yoshizawa, ).

Article Snippet: The genomes of five Xanthomonas strains X. campestris pv. campestris strains ATCC 33913 (da Silva et al., ) and 8004 (Qian et al., ), X. campestris pv.vesicatoria strain 85-10 (Thieme et al., ), X. oryzae pv. oryzae strains KACC10331 (Lee et al., , ) and MAFF 311018 (Ochiai et al., ), X. axonopodis pv. citri strain 306 (da Silva et al., ) have been sequenced.

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