Journal: Journal of Translational Medicine
Article Title: Multi-omic profiling and preclinical efficacy of fratricide-driven, unedited CD7 CAR-T cells in T-cell leukemia
doi: 10.1186/s12967-026-07701-5
Figure Lengend Snippet: Autologous manufacturing and malignant contamination assessment in UMCG-001. ( A ) UMCG-001 manufactured from T-ALL patient 1 (T-ALL_1) derived material. ( B ) IFN-γ secretion upon 72 h co-culture of UMCG-001 batches with CD7 + (Jurkat, MOLT-4), autologous T-ALL and CD7 Neg K-562 cells. ( C ) Flow cytometry-based assessment of the percentage of killing of CD7 + (Jurkat, MOLT-4), autologous T-ALL and CD7 Neg K-562cells by UMCG-001. ( D ) Flow cytometry dot blot illustrating CD7 and surface CD3 (sCD3) expression in UMCG-001 and CD19 CAR-T cells upon fratricide. ( E ) Percentage of surface CD7 and CD3 over time in T.ALL_1 UMCG-001 final DP. Day − 1 represents the day before activation, day 0 after activation and transduction, and day 16 end of the fratricidal phase. ( F ) Schematic representation of sample preparation for subsequent single-cell RNA sequencing. T-ALL_1 original sample was composed of healthy (sCD3 + ) and blasts (sCD3 - ), which were sorted based on sCD3 expression. The whole sample was subjected to CAR - T manufacturing, after which CAR + cells were sorted based on GFP expression. All sorted samples were processed for V( D )J and gene expression (GEX) single-cell libraries. ( G ) Violin plot representation of genes related to malignant phenotype across TALL_1 sample. ( H ) Relative abundance of TCR clones across CD19 CAR-T cells UMCG-001 and sCD3 + samples, calculated as the number of unique TCRs per total number of cells. ( I ) Clone sizes across CD19 CAR-T cells and UMCG-001 batches generated from independent healthy donors (gray) and T-ALL_1 (black). The number of cells per clone group is shown
Article Snippet: IFN-γ secretion was quantified using the Simple Plex Human IFN-γ (3rd Gen) Cartridge on the ELLA platform (Protein Simple, Bio-Techne, Minneapolis, USA) as previously described [ ].
Techniques: Derivative Assay, Co-Culture Assay, Flow Cytometry, Dot Blot, Expressing, Activation Assay, Transduction, Sample Prep, Single Cell, RNA Sequencing, Gene Expression, Clone Assay, Generated