shewanella species  (ATCC)

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: Nucleotide sequence diversity of 59 Shewanella type strains

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques: Sequencing

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: Phylogenetic tree reconstructed by the neighbor-joining method based on six concatenated gene sequences (gyrA, gyrB, infB, recN, rpoA, and topA [4,191 bp]) of 59 Shewanella type strains. The robustness of tree topologies was evaluated with 1,000 bootstrap replications, and values of >70% are shown at the nodes of the branches. The scale bar indicates substitutions per site. The strains Aeromonas hydrophila ATCC 7966T, Escherichia coli JCM 1649T, and Vibrio cholerae ATCC 14035T served as outgroups.

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques:

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: Correlation analysis between similarities of isDDH and MLSA for the genus Shewanella. The vertical line indicates a 70% isDDH threshold, and the horizontal line indicates the corresponding 97.3% MLSA similarity. The four points greater than the species boundary are marked in red.

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques:

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: Distinctive phenotypic characteristics among five Shewanella strains a

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques:

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: Concatenated split network tree based on six gene loci. The gyrA, gyrB, infB, recN, rpoA, and topA gene sequences from 56 validated Shewanella species were concatenated and reconstructed using the SplitsTree 4 program. Twelve distinct clades were identified and are indicated in the figure by red outlines.

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques:

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques: Algae

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: Phylogenetic tree reconstructed by the neighbor-joining method based on six concatenated gene sequences (gyrA, gyrB, infB, recN, rpoA, and topA, 4191 bp) of 86 Shewanella tested strains and 26 related type strains. The number of tested strains for each compact cluster (black triangle) is shown in parentheses (each of these clusters also contained one type strain). The robustness of tree topologies was evaluated with 1,000 bootstrap replications, and values of >70% are shown at the nodes of the branches. The scale bar indicates the substitutions per site.

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques:

Journal: Applied and Environmental Microbiology

Article Title: Multilocus Sequence Analysis, a Rapid and Accurate Tool for Taxonomic Classification, Evolutionary Relationship Determination, and Population Biology Studies of the Genus Shewanella

doi: 10.1128/AEM.03126-18

Figure Lengend Snippet: Intraspecies and interspecies similarities of 16S rRNA, six HKGs, and MLSA for 56 validated Shewanella species. The ranges of similarity are displayed in black (intraspecies) and gray (interspecies).

Article Snippet: G+C content and MLSA concatenated similarity of clades in Shewanella species Population genetics of Shewanella species in China.

Techniques: