photobacterium damselae subsp damselae atcc 33539 t  (ATCC)

Journal: mSphere

Article Title: Temporal, Environmental, and Biological Drivers of the Mucosal Microbiome in a Wild Marine Fish, Scomber japonicus

doi: 10.1128/mSphere.00401-20

Figure Lengend Snippet: Prevalence of marine vertebrate pathogen Photobacterium damselae on S. japonicus body sites throughout the sampling effort. (a) Validation of P. damselae 148-bp v4 region by way of phylogenetic comparison to two known pathogenic isolates and nonpathogenic strains. (b) Total relative abundance of P. damselae sOTU across five body sites and environments for successfully sequenced samples. Total prevalence or percentage of samples with P. damelsae present is also calculated for each sample type and displayed at the top of graph (7.4% gill samples, 16.1% skin, 14.7% digesta, 22.2% GI, 5.6% pyloric ceca, 0% water, and 10.5% sediment). (c and d) Proportion of microbial community comprised of P. damselae sOTU across the most prevalent body sites (skin, digesta, and GI) over the 38 sampling events (c) or binned by month across 1 year (d). Relative abundance is calculated as number of P. damselae sOTU reads divided by 1,362, the rarefaction number. Any samples with 0 P. damselae reads are considered under the detection limit and are displayed as equal to 0.00001 relative abundance in order to visualize on the log scale.

Article Snippet: The comparison bacteria strains included the following: two pathogenic Photobacterium species isolates ( P. damselae ATCC 33539 T , GenBank accession no. X74700.1 ; P. damselae , GenBank accession no. D25308.1 ), four nonpathogenic Photobacterium spp. ( P. leiognathi strain ATCC 25521, GenBank accession no. NR_115541.1 ; P. angustum ATCC 25915 T , GenBank accession no. X74685.1 ; P. phosphoreum strain ATCC 11040, GenBank accession no. NR_115205.1 ; P. rosenbergii strain CC1, GenBank accession no. NR_042343.1 ), and two outgroup Vibrio species ( Vibrio pelagius strain ATCC 25916, GenBank accession no. NR_119059.1 ; Aliivibrio fischeri strain ATCC 7744, GenBank accession no. NR_115204.1 ) which were identified from various studies ( ).

Techniques: Sampling

Journal: Applied and Environmental Microbiology

Article Title: Photobacterium angustum and Photobacterium kishitanii , Psychrotrophic High-Level Histamine-Producing Bacteria Indigenous to Tuna

doi: 10.1128/AEM.02833-15

Figure Lengend Snippet: Photobacterium strains used in this study

Article Snippet: The other tested Photobacterium species, with the exception of P. damselae subsp. damselae strain ATCC 33539 T , produced little or no histamine.

Techniques:

Journal: Applied and Environmental Microbiology

Article Title: Photobacterium angustum and Photobacterium kishitanii , Psychrotrophic High-Level Histamine-Producing Bacteria Indigenous to Tuna

doi: 10.1128/AEM.02833-15

Figure Lengend Snippet: Real-time PCR and mean histamine production results for Photobacterium strains

Article Snippet: The other tested Photobacterium species, with the exception of P. damselae subsp. damselae strain ATCC 33539 T , produced little or no histamine.

Techniques: Real-time Polymerase Chain Reaction

Journal:

Article Title: Cloning and Sequencing of the Histidine Decarboxylase Genes of Gram-Negative, Histamine-Producing Bacteria and Their Application in Detection and Identification of These Organisms in Fish

doi: 10.1128/AEM.69.5.2568-2579.2003

Figure Lengend Snippet: Characteristics of bacterial strains used in this study

Article Snippet: Partial hdc and 16S rDNA sequences obtained in this study were deposited in the DDBJ nucleotide sequence databases. hdc sequences from the following strains were deposited under the indicated numbers: M. morganii strain JCM1672 T , AB083200 ; M. morganii strain 87411, AB083201 ; M. morganii strain AP28, AB083202 ; M. morganii strain JU27, AB083203 ; R. planticola strain 8433, AB083205 ; R. planticola strain 4131, AB083206 ; P. vulgaris strain AU34, AB083204 ; Erwinia sp. strain MB31, AB083208 ; P. phosphoreum strain MB36, AB084250 ; P. damselae strain ATCC 33539 T , AB084251 ; P. damselae strain JCM8968, AB084252 .

Techniques:

Journal:

Article Title: Cloning and Sequencing of the Histidine Decarboxylase Genes of Gram-Negative, Histamine-Producing Bacteria and Their Application in Detection and Identification of These Organisms in Fish

doi: 10.1128/AEM.69.5.2568-2579.2003

Figure Lengend Snippet: Summary of SSCP results for representative strains of gram-negative histamine producers

Article Snippet: Partial hdc and 16S rDNA sequences obtained in this study were deposited in the DDBJ nucleotide sequence databases. hdc sequences from the following strains were deposited under the indicated numbers: M. morganii strain JCM1672 T , AB083200 ; M. morganii strain 87411, AB083201 ; M. morganii strain AP28, AB083202 ; M. morganii strain JU27, AB083203 ; R. planticola strain 8433, AB083205 ; R. planticola strain 4131, AB083206 ; P. vulgaris strain AU34, AB083204 ; Erwinia sp. strain MB31, AB083208 ; P. phosphoreum strain MB36, AB084250 ; P. damselae strain ATCC 33539 T , AB084251 ; P. damselae strain JCM8968, AB084252 .

Techniques: