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n acetyl galactosamine galnac  (AUTODOCK GmbH)

 
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    Structured Review

    AUTODOCK GmbH n acetyl galactosamine galnac
    Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; <t> GalNAc: </t> <t> N-acetyl-galactosamine; </t> Man: mannose.
    N Acetyl Galactosamine Galnac, supplied by AUTODOCK GmbH, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/n acetyl galactosamine galnac/product/AUTODOCK GmbH
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    n acetyl galactosamine galnac - by Bioz Stars, 2024-12
    86/100 stars

    Images

    1) Product Images from "Structural and Phylogenetic In Silico Characterization of Vitis vinifera PRR Protein as Potential Target for Plasmopara viticola Infection"

    Article Title: Structural and Phylogenetic In Silico Characterization of Vitis vinifera PRR Protein as Potential Target for Plasmopara viticola Infection

    Journal: International Journal of Molecular Sciences

    doi: 10.3390/ijms25179553

    Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; GalNAc: N-acetyl-galactosamine; Man: mannose.
    Figure Legend Snippet: Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; GalNAc: N-acetyl-galactosamine; Man: mannose.

    Techniques Used: Sequencing

    Affinity (Kcal/mol) calculated for each structure employing GalNAc as ligand. n.d.: non-determined.
    Figure Legend Snippet: Affinity (Kcal/mol) calculated for each structure employing GalNAc as ligand. n.d.: non-determined.

    Techniques Used:

    Cartoon representation of LecRLKs modeled with Phyre2 and represented by Pymol. Amino acids implicated in carbohydrate stability are shown as sticks, and GalNAc ligands are shown as green sticks. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87 .
    Figure Legend Snippet: Cartoon representation of LecRLKs modeled with Phyre2 and represented by Pymol. Amino acids implicated in carbohydrate stability are shown as sticks, and GalNAc ligands are shown as green sticks. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87 .

    Techniques Used:

    Surface electrostatic potential calculated by PyMOL. A positive charge is shown in blue, and a negative charge is shown in red. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87. GalNAc ligands are represented by green sticks .
    Figure Legend Snippet: Surface electrostatic potential calculated by PyMOL. A positive charge is shown in blue, and a negative charge is shown in red. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87. GalNAc ligands are represented by green sticks .

    Techniques Used:



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    Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; <t> GalNAc: </t> <t> N-acetyl-galactosamine; </t> Man: mannose.
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    Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; <t> GalNAc: </t> <t> N-acetyl-galactosamine; </t> Man: mannose.
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    Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; <t> GalNAc: </t> <t> N-acetyl-galactosamine; </t> Man: mannose.
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    Image Search Results


    Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; GalNAc: N-acetyl-galactosamine; Man: mannose.

    Journal: International Journal of Molecular Sciences

    Article Title: Structural and Phylogenetic In Silico Characterization of Vitis vinifera PRR Protein as Potential Target for Plasmopara viticola Infection

    doi: 10.3390/ijms25179553

    Figure Lengend Snippet: Carbohydrate specificity based on homology modeling. PDB homology code was obtained for each LecRLK sequence based on maximum confidence level and maximum sequence coverage. Asterisk corresponds to an incompletely modeled sequence. Gal: galactose; Gal-α-1, 3-Gal: galactose-alpha-1, 3-galactose; GluNAc: N-acetyl-glucosamine; GalNAc: N-acetyl-galactosamine; Man: mannose.

    Article Snippet: Initially, a 3D structure of N-acetyl-galactosamine (GalNAc) with the minimization of energy was generated with CORINA Classic ( https://demos.mn-am.com/corina_interactive.html (accessed on 1 July 2024)) and Antechamber software v22.2, and using Autodock/Vina’s default settings, the potential binding sites for GalNAc within the already generated models were searched for [ , , ].

    Techniques: Sequencing

    Affinity (Kcal/mol) calculated for each structure employing GalNAc as ligand. n.d.: non-determined.

    Journal: International Journal of Molecular Sciences

    Article Title: Structural and Phylogenetic In Silico Characterization of Vitis vinifera PRR Protein as Potential Target for Plasmopara viticola Infection

    doi: 10.3390/ijms25179553

    Figure Lengend Snippet: Affinity (Kcal/mol) calculated for each structure employing GalNAc as ligand. n.d.: non-determined.

    Article Snippet: Initially, a 3D structure of N-acetyl-galactosamine (GalNAc) with the minimization of energy was generated with CORINA Classic ( https://demos.mn-am.com/corina_interactive.html (accessed on 1 July 2024)) and Antechamber software v22.2, and using Autodock/Vina’s default settings, the potential binding sites for GalNAc within the already generated models were searched for [ , , ].

    Techniques:

    Cartoon representation of LecRLKs modeled with Phyre2 and represented by Pymol. Amino acids implicated in carbohydrate stability are shown as sticks, and GalNAc ligands are shown as green sticks. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87 .

    Journal: International Journal of Molecular Sciences

    Article Title: Structural and Phylogenetic In Silico Characterization of Vitis vinifera PRR Protein as Potential Target for Plasmopara viticola Infection

    doi: 10.3390/ijms25179553

    Figure Lengend Snippet: Cartoon representation of LecRLKs modeled with Phyre2 and represented by Pymol. Amino acids implicated in carbohydrate stability are shown as sticks, and GalNAc ligands are shown as green sticks. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87 .

    Article Snippet: Initially, a 3D structure of N-acetyl-galactosamine (GalNAc) with the minimization of energy was generated with CORINA Classic ( https://demos.mn-am.com/corina_interactive.html (accessed on 1 July 2024)) and Antechamber software v22.2, and using Autodock/Vina’s default settings, the potential binding sites for GalNAc within the already generated models were searched for [ , , ].

    Techniques:

    Surface electrostatic potential calculated by PyMOL. A positive charge is shown in blue, and a negative charge is shown in red. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87. GalNAc ligands are represented by green sticks .

    Journal: International Journal of Molecular Sciences

    Article Title: Structural and Phylogenetic In Silico Characterization of Vitis vinifera PRR Protein as Potential Target for Plasmopara viticola Infection

    doi: 10.3390/ijms25179553

    Figure Lengend Snippet: Surface electrostatic potential calculated by PyMOL. A positive charge is shown in blue, and a negative charge is shown in red. ( A ) A0A438E3M7; ( B ) A0A438J290; ( C ) F6CH85; ( D ) F6CH87. GalNAc ligands are represented by green sticks .

    Article Snippet: Initially, a 3D structure of N-acetyl-galactosamine (GalNAc) with the minimization of energy was generated with CORINA Classic ( https://demos.mn-am.com/corina_interactive.html (accessed on 1 July 2024)) and Antechamber software v22.2, and using Autodock/Vina’s default settings, the potential binding sites for GalNAc within the already generated models were searched for [ , , ].

    Techniques: