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Matrix Science ms ms peak lists
Systemic monitoring of AD progression. Time evolution of the liposomal coronas in APP/PS1 mice. Proteomic comparisons between (a) 2M vs 6M and (b) 6M vs 12M time points ( n = 3 biological replicates; n = 3 mice/replicate). <t>MS</t> <t>peak</t> intensities were analyzed using Progenesis LC-MS software (v. 3.0; Nonlinear Dynamics). Only proteins that differed by a p value
Ms Ms Peak Lists, supplied by Matrix Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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1) Product Images from "Nanoparticle-Enabled Enrichment of Longitudinal Blood Proteomic Fingerprints in Alzheimer’s Disease"

Article Title: Nanoparticle-Enabled Enrichment of Longitudinal Blood Proteomic Fingerprints in Alzheimer’s Disease

Journal: ACS Nano

doi: 10.1021/acsnano.1c00658

Systemic monitoring of AD progression. Time evolution of the liposomal coronas in APP/PS1 mice. Proteomic comparisons between (a) 2M vs 6M and (b) 6M vs 12M time points ( n = 3 biological replicates; n = 3 mice/replicate). MS peak intensities were analyzed using Progenesis LC-MS software (v. 3.0; Nonlinear Dynamics). Only proteins that differed by a p value
Figure Legend Snippet: Systemic monitoring of AD progression. Time evolution of the liposomal coronas in APP/PS1 mice. Proteomic comparisons between (a) 2M vs 6M and (b) 6M vs 12M time points ( n = 3 biological replicates; n = 3 mice/replicate). MS peak intensities were analyzed using Progenesis LC-MS software (v. 3.0; Nonlinear Dynamics). Only proteins that differed by a p value

Techniques Used: Mouse Assay, Liquid Chromatography with Mass Spectroscopy, Software

AD-specific longitudinal proteomic alterations in blood. Proteomic comparison between “healthy” and “diseased” protein coronas at the 2 month (2M), 6 month (6M), and 12 month (12M) time points ( n = 3 biological replicates; n = 3 mice/replicate). MS peak intensities were analyzed using Progenesis LC-MS software (v. 3.0; Nonlinear Dynamics). Only proteins that differed between APP/PS1 and WT mice with a p value
Figure Legend Snippet: AD-specific longitudinal proteomic alterations in blood. Proteomic comparison between “healthy” and “diseased” protein coronas at the 2 month (2M), 6 month (6M), and 12 month (12M) time points ( n = 3 biological replicates; n = 3 mice/replicate). MS peak intensities were analyzed using Progenesis LC-MS software (v. 3.0; Nonlinear Dynamics). Only proteins that differed between APP/PS1 and WT mice with a p value

Techniques Used: Mouse Assay, Liquid Chromatography with Mass Spectroscopy, Software

Related Articles

Generated:

Article Title: Translation attenuation by minocycline enhances longevity and proteostasis in old post-stress-responsive organisms
Article Snippet: Data were converted using the ABSCIEX conversion software to mgf format and MZML format. .. The peak list was generated by searching a SwissProt database using MASCOT, with the taxonomy set to C. elegans and E. coli simultaneously (Matrix Science). .. An MS/MS Ion search was performed using the 15 N quantification, with a peptide mass tolerance of ±0.1 Da and a fragment mass tolerance of ±0.1 Da.

Software:

Article Title: The Balance in the Delivery of ER Components and the Vacuolar Proton Pump to the Phagosome Depends on Myosin IK in Dictyostelium *
Article Snippet: From the MS and MS/MS spectra, peak lists were generated without peak removal after centroiding and deisotoping (analyst QS 1.1; Applied Biosystems; combined with Mascot script version 1.6b13; Matrix Science). .. The peak list was then applied to a database search against Dictybase, the Dictyostelium protein database ( ) (dicty_primary_decoy downloaded on 22.02.2010, 54294 entries), using the Mascot software, version 2.2.4 (Matrix Science). .. The Scaffold software (Proteome Software Inc.), version 3.0.8, was used for editing of MS/MS identifications.

Article Title: A Novel 12.6-kDa Protein of Leishmania donovani for the Diagnosis of Indian Visceral Leishmaniasis
Article Snippet: The recognized protein spot was excised from 2D gel for MALDI-TOF characterization. .. The peak lists of the MALDI-TOF were used for PMF analysis with the Mascot software of the Matrix Science together with NCBI sequence database ( ). .. The protein sequence obtained from mass spectrometry analysis was recognized as an L. donovani -specific anamorsin protein of 12.6 kDa , which we designated as BHUP3 protein. (GenBank accession number:

Article Title: Identification of Essential Filovirion-associated Host Factors by Serial Proteomic Analysis and RNAi Screen *
Article Snippet: An LC gradient of 5%–60% was generated with 95% ACN and 0.1% formic acid in water over 35 min. MS/MS peak lists were generated by the Analyst software (version 1.4). .. All MS/MS data were searched against the theoretical spectra of the NCBI nr database (release 2.2.12 of 9–7-2005) using taxonomies Homo Sapiens (255,836 sequences searched), Zaire ebolavirus (9 sequences searched), or Lake Victoria marburgvirus (7 sequences searched) using Mascot software (Matrix Science, version NT2.0, Torrance, CA). .. The search parameters included a maximum of one missed cleavage by trypsin, variable modification of oxidized methionine, charge state of + 2 to + 3, an MS tolerance of ±1.2 Da, and an MS/MS tolerance of ±0.8 Da.

Sequencing:

Article Title: Production of cecropin A antimicrobial peptide in rice seed endosperm
Article Snippet: The MS/MS raw data were analysed using Data Analysis software (Bruker Daltonik GmbH) to generate the peak lists. .. A local database including the cecropin A sequence was queried using the Mascot search engine (v. 2.2.04; Matrix Science) with the following parameters: trypsin as enzyme, 1 missed cleavage allowed, oxidation of methionine as variable modification, 15 ppm in MS and 0.05 Da in MS/MS. .. Disease resistance assays Resistance to F. verticillioides was assayed in transgenic rice seeds by inoculation with spore suspensions at different concentrations (103 or 105 spores/ml) on MS medium without sucrose as previously described [ ].

Article Title: A Novel 12.6-kDa Protein of Leishmania donovani for the Diagnosis of Indian Visceral Leishmaniasis
Article Snippet: The recognized protein spot was excised from 2D gel for MALDI-TOF characterization. .. The peak lists of the MALDI-TOF were used for PMF analysis with the Mascot software of the Matrix Science together with NCBI sequence database ( ). .. The protein sequence obtained from mass spectrometry analysis was recognized as an L. donovani -specific anamorsin protein of 12.6 kDa , which we designated as BHUP3 protein. (GenBank accession number:

Modification:

Article Title: Production of cecropin A antimicrobial peptide in rice seed endosperm
Article Snippet: The MS/MS raw data were analysed using Data Analysis software (Bruker Daltonik GmbH) to generate the peak lists. .. A local database including the cecropin A sequence was queried using the Mascot search engine (v. 2.2.04; Matrix Science) with the following parameters: trypsin as enzyme, 1 missed cleavage allowed, oxidation of methionine as variable modification, 15 ppm in MS and 0.05 Da in MS/MS. .. Disease resistance assays Resistance to F. verticillioides was assayed in transgenic rice seeds by inoculation with spore suspensions at different concentrations (103 or 105 spores/ml) on MS medium without sucrose as previously described [ ].

Mass Spectrometry:

Article Title: Production of cecropin A antimicrobial peptide in rice seed endosperm
Article Snippet: The MS/MS raw data were analysed using Data Analysis software (Bruker Daltonik GmbH) to generate the peak lists. .. A local database including the cecropin A sequence was queried using the Mascot search engine (v. 2.2.04; Matrix Science) with the following parameters: trypsin as enzyme, 1 missed cleavage allowed, oxidation of methionine as variable modification, 15 ppm in MS and 0.05 Da in MS/MS. .. Disease resistance assays Resistance to F. verticillioides was assayed in transgenic rice seeds by inoculation with spore suspensions at different concentrations (103 or 105 spores/ml) on MS medium without sucrose as previously described [ ].

Tandem Mass Spectroscopy:

Article Title: Production of cecropin A antimicrobial peptide in rice seed endosperm
Article Snippet: The MS/MS raw data were analysed using Data Analysis software (Bruker Daltonik GmbH) to generate the peak lists. .. A local database including the cecropin A sequence was queried using the Mascot search engine (v. 2.2.04; Matrix Science) with the following parameters: trypsin as enzyme, 1 missed cleavage allowed, oxidation of methionine as variable modification, 15 ppm in MS and 0.05 Da in MS/MS. .. Disease resistance assays Resistance to F. verticillioides was assayed in transgenic rice seeds by inoculation with spore suspensions at different concentrations (103 or 105 spores/ml) on MS medium without sucrose as previously described [ ].

Article Title: Characterization of T Antigens, Including Middle T and Alternative T, Expressed by the Human Polyomavirus Associated with Trichodysplasia Spinulosa
Article Snippet: Peak lists were generated using Data Analysis, version 4.0 (Bruker Daltonics, Bremen, Germany), with default settings and exported as Mascot generic files. .. TSPyV T antigen sequences were added to the human UniProt database, and the MS/MS spectra were searched against this combined database using the Mascot algorithm (Mascot, version 2.4.1; Matrix Science, London, United Kingdom). ..

Article Title: Extending SILAC to Proteomics of Plant Cell Lines [C]Extending SILAC to Proteomics of Plant Cell Lines [C] [W]Extending SILAC to Proteomics of Plant Cell Lines [C] [W] [OA]
Article Snippet: SILAC pairs (H/L) or SILAC triplets (H/M/L) were determined and quantified by the software prior to identification of fragmented peaks. .. Derived peak lists of MS/MS spectra and accurate precursor masses were searched against a decoy protein database consisting of the IPI databases of human (v3.64), Arabidopsis (v3.62), and 262 commonly observed contaminants using the Mascot search engine (Matrix Science). ..

Article Title: Identification of Essential Filovirion-associated Host Factors by Serial Proteomic Analysis and RNAi Screen *
Article Snippet: An LC gradient of 5%–60% was generated with 95% ACN and 0.1% formic acid in water over 35 min. MS/MS peak lists were generated by the Analyst software (version 1.4). .. All MS/MS data were searched against the theoretical spectra of the NCBI nr database (release 2.2.12 of 9–7-2005) using taxonomies Homo Sapiens (255,836 sequences searched), Zaire ebolavirus (9 sequences searched), or Lake Victoria marburgvirus (7 sequences searched) using Mascot software (Matrix Science, version NT2.0, Torrance, CA). .. The search parameters included a maximum of one missed cleavage by trypsin, variable modification of oxidized methionine, charge state of + 2 to + 3, an MS tolerance of ±1.2 Da, and an MS/MS tolerance of ±0.8 Da.

Derivative Assay:

Article Title: Extending SILAC to Proteomics of Plant Cell Lines [C]Extending SILAC to Proteomics of Plant Cell Lines [C] [W]Extending SILAC to Proteomics of Plant Cell Lines [C] [W] [OA]
Article Snippet: SILAC pairs (H/L) or SILAC triplets (H/M/L) were determined and quantified by the software prior to identification of fragmented peaks. .. Derived peak lists of MS/MS spectra and accurate precursor masses were searched against a decoy protein database consisting of the IPI databases of human (v3.64), Arabidopsis (v3.62), and 262 commonly observed contaminants using the Mascot search engine (Matrix Science). ..

Article Title: Correlation of Phenotypic Profiles Using Targeted Proteomics Identifies Mycobacterial Esx-1 Substrates
Article Snippet: .. MRM/SRM Generation We utilized two empirical data sources to determine and develop our MRM/SRM transitions: existing LC–MRM results and LC–MS/MS identifications similar to that described., , − We maintain an in-house database of identified M. marinum proteins from culture filtrates and whole cell lysates and an in-house atlas of MRM transitions derived from these protein identifications, many of which have been previously used in other publications and validated with synthetic stable-isotope analogues of the peptides., , In general, our available proteome was collected by triplicate analysis of M. marinum cell lysates and culture filtrates by LC–MS/MS as described in Li et al., using nano UHPLC–MS/MS. mgf (Matrix Science) peak lists from the LTQ-Velos Orbitrap data were searched against the current M. marinum M strain FASTA database using the Paragon algorithm in ‘Rapid search mode’. ..

Peptide Mass Fingerprinting:

Article Title: A Novel 12.6-kDa Protein of Leishmania donovani for the Diagnosis of Indian Visceral Leishmaniasis
Article Snippet: The recognized protein spot was excised from 2D gel for MALDI-TOF characterization. .. The peak lists of the MALDI-TOF were used for PMF analysis with the Mascot software of the Matrix Science together with NCBI sequence database ( ). .. The protein sequence obtained from mass spectrometry analysis was recognized as an L. donovani -specific anamorsin protein of 12.6 kDa , which we designated as BHUP3 protein. (GenBank accession number:

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    Matrix Science ms ms peak lists
    Ms Ms Peak Lists, supplied by Matrix Science, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/ms ms peak lists/product/Matrix Science
    Average 86 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    ms ms peak lists - by Bioz Stars, 2021-06
    86/100 stars
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