Staining:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Two Tailed Test:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
MANN-WHITNEY:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Recombinant:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Plasmid Preparation:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Control Assay:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Electrophoresis:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Dot Blot:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Hybridization:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Transfection:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Immunoprecipitation:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Infection:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Expressing:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Immunostaining:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Western Blot:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Binding Assay:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
Sequencing:Article Title: Human cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion.
Article Snippet: Western blot analysis was carried out according to standard procedures using the following antibodies: rabbit polyclonal anti-Cactin (Abnova, PAB23952, diluted 1:1000); rabbit polyclonal anti-Sororin (kind gift from Jan-Michael Peters, 1:1000); rabbit polyclonal antiUPF1 (Chawla et al., 2011) (raised against a peptide corresponding to the UPF1 C-terminal sequence ERAYQHGGVTGLSQY at PolyPeptide Group, 1:1000); mouse monoclonal antiGolgin 97 (Molecular probes, A-21270, 1:1000); rabbit polyclonal anti-LaminB1 (GeneTex, GTX103292, 1:1000); mouse monoclonal anti-Actin (Abcam, ab8224, 1:5000); rabbit polyclonal anti-DHX8 (Bethyl Laboratories, A300-624A-M, 1:1000); mouse monoclonal antiSRRM2 (Santa Cruz Biotechnology, sc-390315, 1:200); mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:1000); mouse monoclonal anti-TRF1 (Abcam, ab10579, 1:1000); rabbit polyclonal anti-RAP1 (Bethyl Laboratories, A300-306A, 1:500); mouse monoclonal anti-TPP1 (Abnova, H0006557-M02, 1:500); mouse monoclonal anti-HA (Santa Cruz Biotechnology, sc57592, 1:2000); mouse monoclonal anti-Myc (Cell Signalling, 2276, 1:2000); rabbit polyclonal anti-KAP1 (Bethyl Laboratories, A300-274A, 1:2000); rabbit polyclonal antiphospho KAP1 S824 (Bethyl Laboratories, A300-767A, 1:1000); mouse monoclonal antiCHK1 (Santa Cruz Biotechnology, sc-8408, 1:1000); rabbit monoclonal anti-phospho CHK1 S345 (Cell Signaling, 2348, 1:500); rabbit polyclonal anti-phospho RPA32 S33 (Bethyl Laboratories, A300-246A, 1:1000); HRP-conjugated goat anti-mouse and anti-rabbit IgGs (Bethyl Laboratories, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Western blots were performed according to standard procedures using the following primary antibodies: a mouse monoclonal anti-TRF2 (Millipore, 05-521, dilution 1:2000), a rabbit polyclonal anti-TRF1 raised against full-length recombinant TRF1 (kind gift from Jan Karlseder, 1:2000), a rabbit polyclonal anti-Tankyrase 1 (kind gift from Susan Smith, 1:5000), a rabbit polyclonal anti-RNaseH1 (GeneTex, GTX117624, 1:1000), a mouse monoclonal anti-hbetaActin (Abcam, ab8224, 1:10000), and a rabbit polyclonal anti-LaminA (GeneTex, GTX111677S, 1:5000).
Article Title: TERRA transcription destabilizes telomere integrity to initiate break-induced replication in human ALT cells
Article Snippet: The following primary antibodies were used: a rabbit monoclonal anti-HA (Cell Signaling, 3724; 1:1000 dilution), a rabbit polyclonal anti-RAP1 (Bethyl, A300-306A; 1:2000), a mouse monoclonal anti-TRF2 (Millipore, 05-521; 1:2000), a mouse monoclonal anti-POLD3 (Novus Biologicals, H00010714-M01; 1:500), a mouse monoclonal anti-PML (Santa Cruz Biotechnology, sc-966; 1:500), a rabbit polyclonal anti-pSer33 (Bethyl, A300-246A; 1:2000), a rabbit polyclonal anti-RPA32 (Bethyl, A300-244A; 1:1000), a mouse monoclonal anti-γH2AX (Millipore, 05-636; 1:2000).
Article Title: TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R-loops
Article Snippet: Antibodies were as follows: a mouse monoclonal anti-Flag (Sigma-Aldrich, F1804, 1:1000), a mouse monoclonal anti-Myc (Sigma-Aldrich M4439, 1:500), a rabbit polyclonal anti-pSer33, (Bethyl Laboratories A300-244A, 1:500), a mouse monoclonal anti-TRF2 (Millipore, 05-521, 1:500), and a mouse monoclonal mix raised against a recombinant peptide spanning the A domain of hTRF1 (raised at the monoclonal antibody facility of Max F. Perutz Laboratories in Vienna, 1:100).
Article Title: Mir-23a induces telomere dysfunction and cellular senescence by inhibiting TRF2 expression
Article Snippet: Antibodies used in this study were mouse monoclonal anti-TRF2 (Calbiochem, Billerica, MA, USA, OP-129), rabbit polyclonal anti-POT1 (Novus Biologicals, Littleton, CO, USA, NB500-176), rabbit anti-RAP1 (Bethyl Laboratories, Montgomery, TX, USA, A300-306A), rabbit anti-TPP1 and anti-TIN2 (Songyang lab, Guangzhou, Guangdong, China), goat anti-TRF1 (Songyang lab, Guangzhou, Guangdong, China), mouse monoclonal anti-GAPDH (Abmart, Shanghai, China, 3B3), rabbit polyclonal anti-FLAG (Sigma, F7425), mouse IgG (Sigma, St. Louis, MO, USA, I5381), rabbit polyclonal anti-H3K9me3 (Abcam, Cambridge, MA, USA, ab71999), rabbit polyclonal anti-53BP1 (Novus Biologicals, Littleton, CO, USA, NB100-904), mouse monoclonal anti-phospho-ATM (Ser1981) (Millipore, Billerica, MA, USA, 05-740), mouse monoclonal anti-ATM (Millipore, Billerica, MA, USA, 05-513), mouse monoclonal anti-Chk2 (Millipore, Billerica, MA, USA, 05-649), anti-phospho-Chk2 (Thr68) (Cell Signaling Technology, Danvers, MA, USA, 2661), mouse monoclonal anti-p53 (Santa Cruz Biotechnology, Santa Cruz, CA, USA, sc-126), mouse monoclonal anti-p21WAF1 (Millipore, Billerica, MA, USA, OP-64-100UGCN), mouse monoclonal anti-p16INK4a (BD PharMingen, San Jose, CA, USA, 554079), mouse monoclonal anti-BrdU (Sigma, St. Louis, MO, USA, B2531), IRDye-800CW goat anti-mouse (LI-COR, Lincoln, Nebraska USA, 926-32210), IRDye-800CW goat anti-rabbit (LI-COR, Lincoln, Nebraska USA, 926-32211), IRDye-800CW donkey anti-goat (LI-COR, Lincoln, Nebraska USA, 926-32214), Alexa Fluor®488 goat anti-mouse IgG (Invitrogen, Carlsbad, CA, USA, A11001), and Texas-Red goat anti-rabbit IgG (Invitrogen, Carlsbad, CA, USA, T2767).
Article Title: Arsenic exposure through drinking water leads to senescence and alteration of telomere length in humans: A case-control study in West Bengal, India.
Article Snippet: Debmita Chatterjee, Pritha Bhattacharjee, Tanmoy J. Sau, Jayanta K. Das, Nilendu Sarma, Apurba K. Bandyopadhyay, Sib Sankar Roy, and Ashok K. Giri* Molecular and Human Genetics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India Department of Environmental Science, University of Calcutta, Kolkata, India Sir Nil Ratan Sircar Medical College and Hospital, Kolkata, India Department of Dermatology, West Bank Hospital, Howrah, West Bengal, India Cell Biology and Physiology Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India
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