human snp array 6 0 platform  (Thermo Fisher)


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    Name:
    Genome Wide Human SNP Array 6 0
    Description:
    With more than 1 8 million markers including 946 000 probes for the detection of copy number variants and 906 600 SNPs the Affymetrix Genome Wide Human SNP Array 6 0 is a powerful tool for a variety of cytogenetic applications Pure Power and Performance The new Affymetrix Genome Wide Human SNP Array 6 0 features 1 8 million genetic markers including more than 906 600 single nucleotide polymorphisms SNPs and more than 946 000 probes for the detection of copy number variation The SNP Array 6 0 is the only platform with analysis tools to truly bridge copy number and association including a new high resolution reference map and a copy number polymorphism CNP calling algorithm developed by the Broad Institute The SNP Array 6 0 demonstrates industry leading performance and represents more genetic variation on a single array than any other product providing maximum panel power and the highest physical coverage of the genome The high price performance value of the SNP Array 6 0 enables researchers to design association studies with larger sample sizes in the initial scan and replication phases thereby significantly increasing the overall genetic power of their studies Affymetrix Cytogenetics Research Products Affymetrix Copy Number Solution Copy Number and LOH analysis tools in Genotyping Console More than 906 600 SNPs •Unbiased selection of 482 000 SNPs historical SNPs from the SNP Array 5 0 •Selection of additional 424 000 SNPs Tag SNPs SNPs from chromosomes X and Y Mitochondrial SNPs New SNPs added to the dbSNP database SNPs in recombination hotspots More than 946 000 copy number probes •202 000 probes targeting 5 677 CNV regions from the Toronto Database of Genomic Variants •744 000 probes evenly spaced along the genome •Detected 10 times more copy number changes than other SNP CN platforms •Three times more coverage of CNPs only platform with non polymorphic probes •GTC 3 0 leverages new high resolution reference map and CNP calling algorithm developed by the Broad Institute More Information New Software Tools for Copy Number and LOH Analysis
    Catalog Number:
    901150
    Price:
    None
    Applications:
    DNA & RNA Microarray Analysis|Microarray Analysis
    Category:
    Microarrays PCR Arrays
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    Structured Review

    Thermo Fisher human snp array 6 0 platform
    With more than 1 8 million markers including 946 000 probes for the detection of copy number variants and 906 600 SNPs the Affymetrix Genome Wide Human SNP Array 6 0 is a powerful tool for a variety of cytogenetic applications Pure Power and Performance The new Affymetrix Genome Wide Human SNP Array 6 0 features 1 8 million genetic markers including more than 906 600 single nucleotide polymorphisms SNPs and more than 946 000 probes for the detection of copy number variation The SNP Array 6 0 is the only platform with analysis tools to truly bridge copy number and association including a new high resolution reference map and a copy number polymorphism CNP calling algorithm developed by the Broad Institute The SNP Array 6 0 demonstrates industry leading performance and represents more genetic variation on a single array than any other product providing maximum panel power and the highest physical coverage of the genome The high price performance value of the SNP Array 6 0 enables researchers to design association studies with larger sample sizes in the initial scan and replication phases thereby significantly increasing the overall genetic power of their studies Affymetrix Cytogenetics Research Products Affymetrix Copy Number Solution Copy Number and LOH analysis tools in Genotyping Console More than 906 600 SNPs •Unbiased selection of 482 000 SNPs historical SNPs from the SNP Array 5 0 •Selection of additional 424 000 SNPs Tag SNPs SNPs from chromosomes X and Y Mitochondrial SNPs New SNPs added to the dbSNP database SNPs in recombination hotspots More than 946 000 copy number probes •202 000 probes targeting 5 677 CNV regions from the Toronto Database of Genomic Variants •744 000 probes evenly spaced along the genome •Detected 10 times more copy number changes than other SNP CN platforms •Three times more coverage of CNPs only platform with non polymorphic probes •GTC 3 0 leverages new high resolution reference map and CNP calling algorithm developed by the Broad Institute More Information New Software Tools for Copy Number and LOH Analysis
    https://www.bioz.com/result/human snp array 6 0 platform/product/Thermo Fisher
    Average 99 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    human snp array 6 0 platform - by Bioz Stars, 2020-09
    99/100 stars

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    Related Articles

    Next-Generation Sequencing:

    Article Title: Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC
    Article Snippet: .. Overall, we show that NGScopy detects large-scale CNV, similar to those identified by the genome-wide Affymetrix Human SNP Array 6.0, and performs better for TPS data compared to popular CNV NGS-based algorithm, such as VarScan. .. However, NGS, by having greatly improved resolution over SNP array, was superior in terms of detecting small-scale intragenic CNV.

    other:

    Article Title: Submicroscopic subtelomeric aberrations in Chinese patients with unexplained developmental delay/mental retardation
    Article Snippet: Here we report the investigation of 451 Chinese children with clinically unexplained DD/MR, using subtelomere-MLPA and Affymetrix human SNP array 6.0.

    Genome Wide:

    Article Title: Genomic Methods for Clinical and Translational Pain Research
    Article Snippet: .. The Affymetrix Genome-Wide Human SNP 6.0 is the sixth-generation product in genotyping SNPs based on the WGSA assay. .. A single array interrogates 906,600 SNPs by combining the Sty I and Nsp I PCR fractions and through reducing the absolute number of features associated with each SNP on the array.

    Article Title: PHF6 Deletions May Cause Borjeson-Forssman-Lehmann Syndrome in Females
    Article Snippet: .. When high-resolution genomic oligonucleotide arrays became available (Affymetrix Genome-Wide Human SNP Array 6.0), a 14–19 kb deletion on Xq26.31 was found, with no indication of a mosaicism (fig. ). .. The deletion was confirmed by long template PCR, and subsequent sequencing determined the deletion size to be 15,160 bp without flanking rearrangements.

    Article Title: TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
    Article Snippet: .. We analyzed GBM and LGG segmented CNV from SNP array (Affymetrix Genome-Wide Human SNP Array 6.0). ..

    Article Title: Genomic Methods for Clinical and Translational Pain Research
    Article Snippet: .. The following protocol is for processing 48 genomic DNA samples using the Affymetric Genome-Wide Human SNP 6.0 Array and the recommended workflow is shown in . ..

    Article Title: Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC
    Article Snippet: .. Overall, we show that NGScopy detects large-scale CNV, similar to those identified by the genome-wide Affymetrix Human SNP Array 6.0, and performs better for TPS data compared to popular CNV NGS-based algorithm, such as VarScan. .. However, NGS, by having greatly improved resolution over SNP array, was superior in terms of detecting small-scale intragenic CNV.

    Article Title: Evaluating the Influence of Quality Control Decisions and Software Algorithms on SNP Calling for the Affymetrix 6.0 SNP Array Platform
    Article Snippet: .. In this paper, we focused on the Affymetrix Genome-Wide Human SNP Array 6.0 (Affy SNP 6.0) that features 1.8 million genetic markers, including more than 906,600 SNPs and more than 946,000 additional probes for the detection of CNV. .. This chip was an updated version of the previous two-chip design based on the Nsp I and Sty I restriction enzymes.

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  • 99
    Thermo Fisher genome wide human snp array 6 0 platform
    Genome Wide Human Snp Array 6 0 Platform, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 13 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/genome wide human snp array 6 0 platform/product/Thermo Fisher
    Average 99 stars, based on 13 article reviews
    Price from $9.99 to $1999.99
    genome wide human snp array 6 0 platform - by Bioz Stars, 2020-09
    99/100 stars
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