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Image Search Results


(a) Spatial visualization comparing k-means clustering of niche representations from methods (Mievformer, NicheCompass, CellCharter, Banksy, GraphST, STAGATE, ENVI, Spatial, PCA). cell type annotations (left). (b) Heatmap showing the Pearson correlation between eight evaluation metrics (CAS, SCAS, NEA, DREC, NCB-GCS, NCB-CAS, NCB-NASW, NCB-MLAMI) and ground-truth Niche ARI across varying simulation parameters. (c) Horizontal bar graphs showing dual recovery (DREC) metrics across methods and five datasets: Xenium GBM, Xenium Lung, Xenium Pancreas, Mouse Brain Stereo-seq, and Mouse Brain Visium HD.

Journal: bioRxiv

Article Title: Probabilistic coupling of cellular and microenvironmental heterogeneity by masked self-supervised learning

doi: 10.64898/2026.04.21.719876

Figure Lengend Snippet: (a) Spatial visualization comparing k-means clustering of niche representations from methods (Mievformer, NicheCompass, CellCharter, Banksy, GraphST, STAGATE, ENVI, Spatial, PCA). cell type annotations (left). (b) Heatmap showing the Pearson correlation between eight evaluation metrics (CAS, SCAS, NEA, DREC, NCB-GCS, NCB-CAS, NCB-NASW, NCB-MLAMI) and ground-truth Niche ARI across varying simulation parameters. (c) Horizontal bar graphs showing dual recovery (DREC) metrics across methods and five datasets: Xenium GBM, Xenium Lung, Xenium Pancreas, Mouse Brain Stereo-seq, and Mouse Brain Visium HD.

Article Snippet: The Visium HD Mouse Brain data were obtained from the 10x Genomics public dataset repository ( https://www.10xgenomics.com/datasets ).

Techniques: