Structured Review

Illumina Inc beadxpress reader
Beadxpress Reader, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 91/100, based on 19 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/beadxpress reader/product/Illumina Inc
Average 91 stars, based on 19 article reviews
Price from $9.99 to $1999.99
beadxpress reader - by Bioz Stars, 2020-04
91/100 stars

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Related Articles

Amplification:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Briefly, approximately 250-ng genomic DNA was extracted from the blood of each individual and used to genotype each sample that underwent DNA activation, binding to paramagnetic particles, hybridization to oligonucleotides, washing, extension, ligation, amplification by polymerase chain reaction, and hybridization to the Beadplate in an appropriate hybridization buffer. .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Real-time Polymerase Chain Reaction:

Article Title: Associations of Toll-Like Receptor and β-Defensin Polymorphisms with Measures of Periodontal Disease (PD) in HIV+ North American Adults: An Exploratory Study
Article Snippet: Allelic discrimination was performed using a BeadXpress Reader (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions. .. For the determination of DEFB4 /DEFB103A CNV, the real-time quantitative PCR assay was used as described [ ].

Microarray:

Article Title: MiR-25 Regulates Wwp2 and Fbxw7 and Promotes Reprogramming of Mouse Fibroblast Cells to iPSCs
Article Snippet: Paragraph title: Microarray analysis ... Arrays were then scanned using the BeadXpress Reader (Illumina).

Article Title: PADI4 has genetic susceptibility to gastric carcinoma and upregulates CXCR2, KRT14 and TNF-α expression levels
Article Snippet: Paragraph title: Genotyping assay using an Illumina 384-SNP VeraCode microarray ... Genotyping was conducted with a BeadXpress Reader using the Illumina VeraCode Golden Gate Assay kit.

Activity Assay:

Article Title: Lower Calcineurin Inhibitor Doses in Older Compared to Younger Kidney Transplant Recipients Yield Similar Troughs
Article Snippet: The CYP3A5*3 allele is associated with reduced CYP3A5 enzyme activity. ( ) CYP3A5*3 has not been shown to be an clinically important in the metabolism of cyclosporine so it was not genotyped in the cyclosporine recipients. ( – ) Pretransplant recipient DNA was isolated from lymphocytes obtained from peripheral blood after RBC lysis, with DNA purity and concentration determined by ultraviolet spectroscopy (Thermo Scientific, Wilmington, DE). .. Genotypes were visualized using the BeadXpress reader and data analyzed using Illumina Genome BeadStudio.

Expressing:

Article Title: MiR-25 Regulates Wwp2 and Fbxw7 and Promotes Reprogramming of Mouse Fibroblast Cells to iPSCs
Article Snippet: Microarray analysis Total RNA from MEFs, ES cells or iPSCs were hybridized onto MouseWG-6 expression BeadChip (Illumina) according to manufacture's instructions. .. Arrays were then scanned using the BeadXpress Reader (Illumina).

Transformation Assay:

Article Title: MiR-25 Regulates Wwp2 and Fbxw7 and Promotes Reprogramming of Mouse Fibroblast Cells to iPSCs
Article Snippet: Arrays were then scanned using the BeadXpress Reader (Illumina). .. The lumi package was used to perform Vanriance-stabilizing Transformation and Robust Spline Normalization on the expression values .

Hybridization:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Briefly, approximately 250-ng genomic DNA was extracted from the blood of each individual and used to genotype each sample that underwent DNA activation, binding to paramagnetic particles, hybridization to oligonucleotides, washing, extension, ligation, amplification by polymerase chain reaction, and hybridization to the Beadplate in an appropriate hybridization buffer. .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: Hybridization of the GoldenGate Assay product onto the VeraCode beads separate the assay products for individual SNP genotype readout. .. Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling.

Ligation:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Briefly, approximately 250-ng genomic DNA was extracted from the blood of each individual and used to genotype each sample that underwent DNA activation, binding to paramagnetic particles, hybridization to oligonucleotides, washing, extension, ligation, amplification by polymerase chain reaction, and hybridization to the Beadplate in an appropriate hybridization buffer. .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: The resultant ligation products serve as the PCR templates with universal primers. .. Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling.

Generated:

Article Title: Comparative mapping in the Fagaceae and beyond with EST-SSRs
Article Snippet: The intensity of the fluorescent signals was measured with the BeadXpress Reader (Illumina Inc, San Diego, USA) and analyzed with GenomeStudio v 3.1.14 (Illumina Inc). .. Quality scores were generated for each genotype, using a GenCall50 (GC50) score cutoff of 0.25 and a CallRate (CR) threshold of 0.85.

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: .. Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling. .. The GoldenGate Assay includes 48 assay controls, allowing for a high level of confidence and the ability to troubleshoot errors such as PCR and hybridization failures.

other:

Article Title: Genetic variants associated with angiotensin-converting enzyme inhibitor-associated angioedema
Article Snippet: Genotyping was performed using the VeraCode genotyping platform as implemented on a BeadXpress reader by Illumina.

Polymerase Chain Reaction:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Briefly, approximately 250-ng genomic DNA was extracted from the blood of each individual and used to genotype each sample that underwent DNA activation, binding to paramagnetic particles, hybridization to oligonucleotides, washing, extension, ligation, amplification by polymerase chain reaction, and hybridization to the Beadplate in an appropriate hybridization buffer. .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: Following downstream processing, the single-stranded, dye-labeled PCR products are hybridized to their complement bead type through their unique address sequences. .. Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling.

Article Title: Associations of Toll-Like Receptor and β-Defensin Polymorphisms with Measures of Periodontal Disease (PD) in HIV+ North American Adults: An Exploratory Study
Article Snippet: Allelic discrimination was performed using a BeadXpress Reader (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions. .. Reference genes TBP (TATA-Box Binding Protein, GenBank accession #AL031259) and DEFB1 (encoding hBD-1, GenBank accession #NT_023736), specific primer sets producing only one specific product of ~150 bp at 54°C annealing temperature, reaction mix, and conditions were used as described [ ], and the Bio-Rad CFX96TM system (Bio-Rad Laboratories, Hercules, CA, USA) was used for the PCR analysis.

Article Title: Comparison of the Microsatellite and Single Nucleotide Polymorphism Methods for Discriminating among Hanwoo (Korean Native Cattle), Imported, and Crossbred Beef in Korea
Article Snippet: .. The VeraCode bead plates completed through PCR reactant combination process and VeraCode bead plates compound the reaction, were scanned by using BeadXpress reader (Illumina, USA). ..

Binding Assay:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Briefly, approximately 250-ng genomic DNA was extracted from the blood of each individual and used to genotype each sample that underwent DNA activation, binding to paramagnetic particles, hybridization to oligonucleotides, washing, extension, ligation, amplification by polymerase chain reaction, and hybridization to the Beadplate in an appropriate hybridization buffer. .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Article Title: Associations of Toll-Like Receptor and β-Defensin Polymorphisms with Measures of Periodontal Disease (PD) in HIV+ North American Adults: An Exploratory Study
Article Snippet: Allelic discrimination was performed using a BeadXpress Reader (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions. .. Reference genes TBP (TATA-Box Binding Protein, GenBank accession #AL031259) and DEFB1 (encoding hBD-1, GenBank accession #NT_023736), specific primer sets producing only one specific product of ~150 bp at 54°C annealing temperature, reaction mix, and conditions were used as described [ ], and the Bio-Rad CFX96TM system (Bio-Rad Laboratories, Hercules, CA, USA) was used for the PCR analysis.

Genotyping Assay:

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: Paragraph title: SNP and Mutation Genotyping Assay ... Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling.

Article Title: PADI4 has genetic susceptibility to gastric carcinoma and upregulates CXCR2, KRT14 and TNF-α expression levels
Article Snippet: Paragraph title: Genotyping assay using an Illumina 384-SNP VeraCode microarray ... Genotyping was conducted with a BeadXpress Reader using the Illumina VeraCode Golden Gate Assay kit.

Article Title: A preliminary assessment of Toll-like receptor and β-defensin gene polymorphisms in Papua New Guinea - what does it mean for HIV/AIDS?
Article Snippet: Allelic discrimination was performed using a BeadXpress Reader (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions. .. As a control, 30 samples, previously characterized for these TLR SNPs using the same genotyping assay [ ], were randomly selected and genotyped together with the Wosera samples.

Mutagenesis:

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: Paragraph title: SNP and Mutation Genotyping Assay ... Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling.

Isolation:

Article Title: Interaction between thyroglobulin and ADAMTS16 in premature ovarian failure
Article Snippet: Genomic DNA preparation and genotyping The isolation of genomic DNA for all peripheral blood samples was performed using the high-salt buffer method. .. Fluorescent signals were analyzed by using BeadArray Reader and BeadXpress Reader (Illumina Inc.), and GenomeStudio software (Illumina Inc.) was used for genotype determination.

Article Title: Lower Calcineurin Inhibitor Doses in Older Compared to Younger Kidney Transplant Recipients Yield Similar Troughs
Article Snippet: The CYP3A5*3 allele is associated with reduced CYP3A5 enzyme activity. ( ) CYP3A5*3 has not been shown to be an clinically important in the metabolism of cyclosporine so it was not genotyped in the cyclosporine recipients. ( – ) Pretransplant recipient DNA was isolated from lymphocytes obtained from peripheral blood after RBC lysis, with DNA purity and concentration determined by ultraviolet spectroscopy (Thermo Scientific, Wilmington, DE). .. Genotypes were visualized using the BeadXpress reader and data analyzed using Illumina Genome BeadStudio.

Labeling:

Article Title: Interaction between thyroglobulin and ADAMTS16 in premature ovarian failure
Article Snippet: This assay employs an allele-specific primer extension method and uses a two color fluorescent labeling system. .. Fluorescent signals were analyzed by using BeadArray Reader and BeadXpress Reader (Illumina Inc.), and GenomeStudio software (Illumina Inc.) was used for genotype determination.

Article Title: The Genetic Variation of RELN Expression in Schizophrenia and Bipolar Disorder
Article Snippet: .. The labeled beads were scanned using a BeadXpress reader. ..

Goldengate Assay:

Article Title: Interaction between thyroglobulin and ADAMTS16 in premature ovarian failure
Article Snippet: In order to genotype SNPs, we performed a GoldenGate assay (Illumina Inc., San Diego, CA, USA) according to the manufacturer's protocol. .. Fluorescent signals were analyzed by using BeadArray Reader and BeadXpress Reader (Illumina Inc.), and GenomeStudio software (Illumina Inc.) was used for genotype determination.

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: Hybridization of the GoldenGate Assay product onto the VeraCode beads separate the assay products for individual SNP genotype readout. .. Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling.

Article Title: Associations of Toll-Like Receptor and β-Defensin Polymorphisms with Measures of Periodontal Disease (PD) in HIV+ North American Adults: An Exploratory Study
Article Snippet: A total of 41 SNPs in 8 TLR genes (TLR1 , 2 , 3 , 4 , 6 , 7 , 8 and 9 ) were genotyped using Illumina’s GoldenGate genotyping assay system combined with VeraCode Technology (Illumina Inc., San Diego, CA, USA). .. Allelic discrimination was performed using a BeadXpress Reader (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions.

Article Title: A preliminary assessment of Toll-like receptor and β-defensin gene polymorphisms in Papua New Guinea - what does it mean for HIV/AIDS?
Article Snippet: A total of 41 SNPs in 8 TLR genes ( TLR1, 2, 3, 4, 6, 7, 8 and 9 ) were genotyped in the Wosera samples using Illumina’s GoldenGate genotyping assay system combined with VeraCode Technology (Illumina Inc., San Diego, CA, USA). .. Allelic discrimination was performed using a BeadXpress Reader (Illumina Inc., San Diego, CA, USA) according to the manufacturer’s instructions.

Spectroscopy:

Article Title: Lower Calcineurin Inhibitor Doses in Older Compared to Younger Kidney Transplant Recipients Yield Similar Troughs
Article Snippet: The CYP3A5*3 allele is associated with reduced CYP3A5 enzyme activity. ( ) CYP3A5*3 has not been shown to be an clinically important in the metabolism of cyclosporine so it was not genotyped in the cyclosporine recipients. ( – ) Pretransplant recipient DNA was isolated from lymphocytes obtained from peripheral blood after RBC lysis, with DNA purity and concentration determined by ultraviolet spectroscopy (Thermo Scientific, Wilmington, DE). .. Genotypes were visualized using the BeadXpress reader and data analyzed using Illumina Genome BeadStudio.

Concentration Assay:

Article Title: Lower Calcineurin Inhibitor Doses in Older Compared to Younger Kidney Transplant Recipients Yield Similar Troughs
Article Snippet: The CYP3A5*3 allele is associated with reduced CYP3A5 enzyme activity. ( ) CYP3A5*3 has not been shown to be an clinically important in the metabolism of cyclosporine so it was not genotyped in the cyclosporine recipients. ( – ) Pretransplant recipient DNA was isolated from lymphocytes obtained from peripheral blood after RBC lysis, with DNA purity and concentration determined by ultraviolet spectroscopy (Thermo Scientific, Wilmington, DE). .. Genotypes were visualized using the BeadXpress reader and data analyzed using Illumina Genome BeadStudio.

Software:

Article Title: Interaction between thyroglobulin and ADAMTS16 in premature ovarian failure
Article Snippet: .. Fluorescent signals were analyzed by using BeadArray Reader and BeadXpress Reader (Illumina Inc.), and GenomeStudio software (Illumina Inc.) was used for genotype determination. ..

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA). ..

Article Title: Genetic Risk for Malignant Hyperthermia in Non-Anesthesia-Induced Myopathies
Article Snippet: .. Data generated from the BeadXpress reader are analyzed using the Illumina BeadStudio software for automated genotype clustering and calling. .. The GoldenGate Assay includes 48 assay controls, allowing for a high level of confidence and the ability to troubleshoot errors such as PCR and hybridization failures.

Article Title: PADI4 has genetic susceptibility to gastric carcinoma and upregulates CXCR2, KRT14 and TNF-α expression levels
Article Snippet: Genotyping was conducted with a BeadXpress Reader using the Illumina VeraCode Golden Gate Assay kit. .. Genotype clustering and calling were performed using BeadStudio software (Illumina).

Multiplex Assay:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Genotyping was performed at the multiplex level by using the Illumina Golden Gate genotyping system [ ]. .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Article Title: Comparative mapping in the Fagaceae and beyond with EST-SSRs
Article Snippet: Multiplex reactions were prepared with 250 ng of template DNA per sample. .. The intensity of the fluorescent signals was measured with the BeadXpress Reader (Illumina Inc, San Diego, USA) and analyzed with GenomeStudio v 3.1.14 (Illumina Inc).

Selection:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Paragraph title: 2. SNP selection and genotyping ... Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Activation Assay:

Article Title: The association of 5-alpha reductase type 2 (SRD5A2) gene polymorphisms with prostate cancer in a Korean population
Article Snippet: Briefly, approximately 250-ng genomic DNA was extracted from the blood of each individual and used to genotype each sample that underwent DNA activation, binding to paramagnetic particles, hybridization to oligonucleotides, washing, extension, ligation, amplification by polymerase chain reaction, and hybridization to the Beadplate in an appropriate hybridization buffer. .. Image intensities were scanned with a BeadXpress Reader and were genotyped by using Genome Studio software (Illumina Inc., San Diego, CA, USA).

Lysis:

Article Title: Lower Calcineurin Inhibitor Doses in Older Compared to Younger Kidney Transplant Recipients Yield Similar Troughs
Article Snippet: The CYP3A5*3 allele is associated with reduced CYP3A5 enzyme activity. ( ) CYP3A5*3 has not been shown to be an clinically important in the metabolism of cyclosporine so it was not genotyped in the cyclosporine recipients. ( – ) Pretransplant recipient DNA was isolated from lymphocytes obtained from peripheral blood after RBC lysis, with DNA purity and concentration determined by ultraviolet spectroscopy (Thermo Scientific, Wilmington, DE). .. Genotypes were visualized using the BeadXpress reader and data analyzed using Illumina Genome BeadStudio.

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  • 87
    Illumina Inc beadxpress reader machine
    Beadxpress Reader Machine, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 87/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/beadxpress reader machine/product/Illumina Inc
    Average 87 stars, based on 1 article reviews
    Price from $9.99 to $1999.99
    beadxpress reader machine - by Bioz Stars, 2020-04
    87/100 stars
      Buy from Supplier

    89
    Illumina Inc beadxpress reader system
    Beadxpress Reader System, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 89/100, based on 2 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/beadxpress reader system/product/Illumina Inc
    Average 89 stars, based on 2 article reviews
    Price from $9.99 to $1999.99
    beadxpress reader system - by Bioz Stars, 2020-04
    89/100 stars
      Buy from Supplier

    91
    Illumina Inc beadxpress reader
    Beadxpress Reader, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 91/100, based on 19 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/beadxpress reader/product/Illumina Inc
    Average 91 stars, based on 19 article reviews
    Price from $9.99 to $1999.99
    beadxpress reader - by Bioz Stars, 2020-04
    91/100 stars
      Buy from Supplier

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