Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: The results of the comparative genomic analysis of P. lasiusi and other genomes within the genus Paenarthrobacter , conducted using the dDDH method.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Overall statistics for genes encoding P. lasiusi S21 subsystems.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Genes and their encoded proteins for mineral uptake and heavy metal metabolism in the genome of P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Genes involved in the destruction of organic compounds in the genome of P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Enzyme genes and the degradation reactions of aromatic compounds catalyzed by them. ( A ) Biochemical reactions for the degradation of aromatic compounds that can be carried out by several enzymes encoded by the P. lasiusi S21 genome. ( B ) Cluster of genes involved in the degradation of organic compounds found in contig 4.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Clusters of secondary metabolite biosynthesis genes found in the genome of P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Prophages detected in the genome of P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Antiviral defense systems found in the genome of P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: A summary of the genes predicted to have medical relevance in P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Antibiotic resistance profile of P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques: Inhibition

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Structure of the lipidome of P. lasiusi S21. ( A ) Relative content of 42 abundant lipid subclasses. ( B ) Relative content of 27 minor (<0.7%) lipid subclasses. ( C ) Pie chart of the relative content of the 8 major lipid classes. Abbreviations: CL: Cardiolipin; EtherPC: Ether-linked phosphatidylcholine; HBMP: Hemibismonoacylglycerophosphate; LPC: Lysophophatidylcholine; PC: Phosphatidylcholine; PE: Phosphatidylethanolamine; PG: Phosphatidylglycerol; PI: Phosphatidylinositol; PS: Phosphatidylserine; TG_EST: Triacylglycerol estolides; DGDG: Digalactosyldiacylglycerol; EtherDGDG: Ether-linked digalactosyldiacylglycerol; EtherMGDG: Ether-linked monogalactosyldiacylglycerol; MGDG: Monogalactosyldiacylglycerol; DG: Diacylglycerol; EtherDG: Ether-linked diacylglycerol; MG: Monoacylglycerol; TG: Triacylglycerol; AHexCer: Acylhexosylceramide; ASM: Acylsphingomyelin; Cer_AP: Ceramide alpha-hydroxy fatty acid-phytospingosine; Cer_HS: Ceramide hydroxy fatty acid-sphingosine; Cer_NS: Ceramide non-hydroxyfatty acid-sphingosine; DHSph: Sphinganine; PhytoSph: Phytosphingosine; SHexCer: Sulfatide (from group of Acidic glycosphingolipids); SL: Sulfonolipid (from group of Sphingoid bases); SM: Sphingomyelin; CAR: Acylcarnitine; NAE: N-acyl ethanolamines; NAGly: N-acyl glycine; NAGlySer: N-acyl glycyl serine; NAOrn: N-acyl ornithine; AHexBRS: Acylhexosyl brassicasterol; AHexSIS: Acylhexosyl sitosterol; AHexSTS: Acylhexosyl stigmasterols; CE: Cholesteryl ester; ST: Sterol; CoQ: Coenzyme Q; VAE: Vitamin A fatty acid ester.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Unusual Genomic and Biochemical Features of Paenarthrobacter lasiusi sp. nov—A Novel Bacterial Species Isolated from Lasius niger Anthill Soil

doi: 10.3390/ijms26010067

Figure Lengend Snippet: Biochemical test results for P. lasiusi S21.

Article Snippet: Thus, the detection of MGDG, DGDG, and their esters in the membrane of the actinomycete P. lasiusi S21 is of interest in itself, as is the fact that the gene encoding MGDG synthase was detected in its genome (LOCUS_06710 in ) initially via blastp, and subsequently corroborated the presence of the corresponding domains for this protein: diacylglycerol glycosyltransferase and glycosyl transferase, MGDG synthase and glycosyltransferase, and MGDG synthase, according to InterPro, Pfam, and PANTHER, respectively.

Techniques: Activity Assay