acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Modular architecture of the array of scaffoldins identified in the A. <t>cellulolyticus</t> <t>CD2</t> genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system"

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-13-210

    Modular architecture of the array of scaffoldins identified in the A. cellulolyticus CD2 genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    Figure Legend Snippet: Modular architecture of the array of scaffoldins identified in the A. cellulolyticus CD2 genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]

    Techniques Used: Binding Assay

    Relationship of all cohesin modules from A. cellulolyticus and C. thermocellum . Sequence-based dendrogram of cohesin modules from A. cellulolyticus (red) and C. thermocellum (blue). See scheme and key in Figure . Only significant bootstrap values are shown
    Figure Legend Snippet: Relationship of all cohesin modules from A. cellulolyticus and C. thermocellum . Sequence-based dendrogram of cohesin modules from A. cellulolyticus (red) and C. thermocellum (blue). See scheme and key in Figure . Only significant bootstrap values are shown

    Techniques Used: Sequencing

    Sequence conservation pattern of dockerin modules. The two internal dockerin repeats of A. cellulolyticus (based on 137 sequences) and C. thermocellum (71 sequences) are represented by sequence logos. Positions of calcium binding residues are shown in cyan, and putative recognition residues are shown in yellow
    Figure Legend Snippet: Sequence conservation pattern of dockerin modules. The two internal dockerin repeats of A. cellulolyticus (based on 137 sequences) and C. thermocellum (71 sequences) are represented by sequence logos. Positions of calcium binding residues are shown in cyan, and putative recognition residues are shown in yellow

    Techniques Used: Sequencing, Binding Assay

    Comparative distribution of dockerin-containing CAZyme modules in A. cellulolyticus vs. C. thermocellum
    Figure Legend Snippet: Comparative distribution of dockerin-containing CAZyme modules in A. cellulolyticus vs. C. thermocellum

    Techniques Used: Genome Wide

    Summary of protein modules in cellulosomal proteins
    Figure Legend Snippet: Summary of protein modules in cellulosomal proteins

    Techniques Used:

    Putative σ I and anti- σ I regulatory factors in Acetivibrio cellulolyticus CD2
    Figure Legend Snippet: Putative σ I and anti- σ I regulatory factors in Acetivibrio cellulolyticus CD2

    Techniques Used:

    acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Modular architecture of the array of scaffoldins identified in the A. <t>cellulolyticus</t> <t>CD2</t> genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system"

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-13-210

    Modular architecture of the array of scaffoldins identified in the A. cellulolyticus CD2 genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    Figure Legend Snippet: Modular architecture of the array of scaffoldins identified in the A. cellulolyticus CD2 genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]

    Techniques Used: Binding Assay

    Relationship of all cohesin modules from A. cellulolyticus and C. thermocellum . Sequence-based dendrogram of cohesin modules from A. cellulolyticus (red) and C. thermocellum (blue). See scheme and key in Figure . Only significant bootstrap values are shown
    Figure Legend Snippet: Relationship of all cohesin modules from A. cellulolyticus and C. thermocellum . Sequence-based dendrogram of cohesin modules from A. cellulolyticus (red) and C. thermocellum (blue). See scheme and key in Figure . Only significant bootstrap values are shown

    Techniques Used: Sequencing

    Sequence conservation pattern of dockerin modules. The two internal dockerin repeats of A. cellulolyticus (based on 137 sequences) and C. thermocellum (71 sequences) are represented by sequence logos. Positions of calcium binding residues are shown in cyan, and putative recognition residues are shown in yellow
    Figure Legend Snippet: Sequence conservation pattern of dockerin modules. The two internal dockerin repeats of A. cellulolyticus (based on 137 sequences) and C. thermocellum (71 sequences) are represented by sequence logos. Positions of calcium binding residues are shown in cyan, and putative recognition residues are shown in yellow

    Techniques Used: Sequencing, Binding Assay

    Comparative distribution of dockerin-containing CAZyme modules in A. cellulolyticus vs. C. thermocellum
    Figure Legend Snippet: Comparative distribution of dockerin-containing CAZyme modules in A. cellulolyticus vs. C. thermocellum

    Techniques Used: Genome Wide

    Summary of protein modules in cellulosomal proteins
    Figure Legend Snippet: Summary of protein modules in cellulosomal proteins

    Techniques Used:

    Putative σ I and anti- σ I regulatory factors in Acetivibrio cellulolyticus CD2
    Figure Legend Snippet: Putative σ I and anti- σ I regulatory factors in Acetivibrio cellulolyticus CD2

    Techniques Used:

    acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    a cellulolyticus cd2 94  (ATCC)


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    ATCC a cellulolyticus cd2 94
    A Cellulolyticus Cd2 94, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Identification of highly conserved regulatory elements upstream of the primary scaffoldin genes. (A) Alignment of the experimentally validated σI promoter of C. thermocellum cipA and orthologous sequences from other cellulosome-producing bacteria. Predicted −35 and −10 promoter elements are indicated by a line above the alignment. Distances between the promoter region sequences used for the alignment and the first codon of corresponding scaffoldin genes are shown below “5′-UTR.” The WebLogo was generated with the sequences shown in the alignment. The nucleotide code Y represents C or T, and N is any nucleotide. (B) Alignment of the experimentally validated σA promoter of C. thermocellum cipA and orthologous sequences from other cellulosome-producing bacteria. For details, see the legend for panel A. (C) Putative 5′-terminal mRNA secondary structures identified near the primary scaffoldin-coding gene sequence of C. thermocellum (Cth), Clostridium sp. Bc-iso-3 (Csp), C. straminisolvens (Cst), C. clariflavum, and A. <t>cellulolyticus.</t> The secondary structures were predicted using the temperature of the optimal growth conditions of each bacterium as shown in the figure. The conserved nucleotides in the stem-loops are indicated in gray boxes. Nucleotide pairing is shown in red for C-G, in blue for A-U, and in green for G-U. The structure on the left has one nucleotide replacement (U instead of A) in Csp, which is shown with an arrow. Distances between the 3′-nucleotide of the stem-loop structures and the first codon of corresponding scaffoldin genes are numbered, such as in Cth 29(N), Cst 30(N), and Csp 31(N), where N represents any nucleotide.
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    1) Product Images from "Revisiting the Regulation of the Primary Scaffoldin Gene in Clostridium thermocellum"

    Article Title: Revisiting the Regulation of the Primary Scaffoldin Gene in Clostridium thermocellum

    Journal: Applied and Environmental Microbiology

    doi: 10.1128/AEM.03088-16

    Identification of highly conserved regulatory elements upstream of the primary scaffoldin genes. (A) Alignment of the experimentally validated σI promoter of C. thermocellum cipA and orthologous sequences from other cellulosome-producing bacteria. Predicted −35 and −10 promoter elements are indicated by a line above the alignment. Distances between the promoter region sequences used for the alignment and the first codon of corresponding scaffoldin genes are shown below “5′-UTR.” The WebLogo was generated with the sequences shown in the alignment. The nucleotide code Y represents C or T, and N is any nucleotide. (B) Alignment of the experimentally validated σA promoter of C. thermocellum cipA and orthologous sequences from other cellulosome-producing bacteria. For details, see the legend for panel A. (C) Putative 5′-terminal mRNA secondary structures identified near the primary scaffoldin-coding gene sequence of C. thermocellum (Cth), Clostridium sp. Bc-iso-3 (Csp), C. straminisolvens (Cst), C. clariflavum, and A. cellulolyticus. The secondary structures were predicted using the temperature of the optimal growth conditions of each bacterium as shown in the figure. The conserved nucleotides in the stem-loops are indicated in gray boxes. Nucleotide pairing is shown in red for C-G, in blue for A-U, and in green for G-U. The structure on the left has one nucleotide replacement (U instead of A) in Csp, which is shown with an arrow. Distances between the 3′-nucleotide of the stem-loop structures and the first codon of corresponding scaffoldin genes are numbered, such as in Cth 29(N), Cst 30(N), and Csp 31(N), where N represents any nucleotide.
    Figure Legend Snippet: Identification of highly conserved regulatory elements upstream of the primary scaffoldin genes. (A) Alignment of the experimentally validated σI promoter of C. thermocellum cipA and orthologous sequences from other cellulosome-producing bacteria. Predicted −35 and −10 promoter elements are indicated by a line above the alignment. Distances between the promoter region sequences used for the alignment and the first codon of corresponding scaffoldin genes are shown below “5′-UTR.” The WebLogo was generated with the sequences shown in the alignment. The nucleotide code Y represents C or T, and N is any nucleotide. (B) Alignment of the experimentally validated σA promoter of C. thermocellum cipA and orthologous sequences from other cellulosome-producing bacteria. For details, see the legend for panel A. (C) Putative 5′-terminal mRNA secondary structures identified near the primary scaffoldin-coding gene sequence of C. thermocellum (Cth), Clostridium sp. Bc-iso-3 (Csp), C. straminisolvens (Cst), C. clariflavum, and A. cellulolyticus. The secondary structures were predicted using the temperature of the optimal growth conditions of each bacterium as shown in the figure. The conserved nucleotides in the stem-loops are indicated in gray boxes. Nucleotide pairing is shown in red for C-G, in blue for A-U, and in green for G-U. The structure on the left has one nucleotide replacement (U instead of A) in Csp, which is shown with an arrow. Distances between the 3′-nucleotide of the stem-loop structures and the first codon of corresponding scaffoldin genes are numbered, such as in Cth 29(N), Cst 30(N), and Csp 31(N), where N represents any nucleotide.

    Techniques Used: Generated, Sequencing

    acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    l2 50 opitutus terrae pb90 1 verrucomicrobium spinosum dsm 4136 alkaliphilus metalliredigens qymf acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC l2 50 opitutus terrae pb90 1 verrucomicrobium spinosum dsm 4136 alkaliphilus metalliredigens qymf acetivibrio cellulolyticus cd2
    L2 50 Opitutus Terrae Pb90 1 Verrucomicrobium Spinosum Dsm 4136 Alkaliphilus Metalliredigens Qymf Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    acetivibrio cellulolyticus cd2  (NCIMB Ltd)

     
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    NCIMB Ltd acetivibrio cellulolyticus cd2
    Acetivibrio Cellulolyticus Cd2, supplied by NCIMB Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    acetivibrio cellulolyticus cd2  (ATCC)


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    ATCC acetivibrio cellulolyticus cd2
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    • acetivibrio cellulolyticus cd2  (ATCC)
    92
    ATCC acetivibrio cellulolyticus cd2
    Modular architecture of the array of scaffoldins identified in the A. <t>cellulolyticus</t> <t>CD2</t> genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    a cellulolyticus cd2 94  (ATCC)
    92
    ATCC a cellulolyticus cd2 94
    Modular architecture of the array of scaffoldins identified in the A. <t>cellulolyticus</t> <t>CD2</t> genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    A Cellulolyticus Cd2 94, supplied by ATCC, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    l2 50 opitutus terrae pb90 1 verrucomicrobium spinosum dsm 4136 alkaliphilus metalliredigens qymf acetivibrio cellulolyticus cd2  (ATCC)
    96
    ATCC l2 50 opitutus terrae pb90 1 verrucomicrobium spinosum dsm 4136 alkaliphilus metalliredigens qymf acetivibrio cellulolyticus cd2
    Modular architecture of the array of scaffoldins identified in the A. <t>cellulolyticus</t> <t>CD2</t> genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    L2 50 Opitutus Terrae Pb90 1 Verrucomicrobium Spinosum Dsm 4136 Alkaliphilus Metalliredigens Qymf Acetivibrio Cellulolyticus Cd2, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/l2 50 opitutus terrae pb90 1 verrucomicrobium spinosum dsm 4136 alkaliphilus metalliredigens qymf acetivibrio cellulolyticus cd2/product/ATCC
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    l2 50 opitutus terrae pb90 1 verrucomicrobium spinosum dsm 4136 alkaliphilus metalliredigens qymf acetivibrio cellulolyticus cd2 - by Bioz Stars, 2024-10
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    acetivibrio cellulolyticus cd2  (NCIMB Ltd)
    86
    NCIMB Ltd acetivibrio cellulolyticus cd2
    Modular architecture of the array of scaffoldins identified in the A. <t>cellulolyticus</t> <t>CD2</t> genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]
    Acetivibrio Cellulolyticus Cd2, supplied by NCIMB Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Modular architecture of the array of scaffoldins identified in the A. cellulolyticus CD2 genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]

    Journal: BMC Genomics

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    doi: 10.1186/1471-2164-13-210

    Figure Lengend Snippet: Modular architecture of the array of scaffoldins identified in the A. cellulolyticus CD2 genome and their homologs from C. thermocellum ATCC 27405. Putative A. cellulolyticus scaffoldins were identified bioinformatically (see Materials and Methods for their accession numbers). Binding specificities of the indicated (black spots) cohesin and dockerin modules were determined previously [ - ]. The sca gene cluster is framed in a shaded box. All proteins have an N-terminal signal peptide except for ScaI. Acronyms: GH9, family-9 glycoside hydrolase; CBM(n), carbohydrate-binding module (family number); Cu, Copper amine oxidase; FN3, Fibronectin type III domain; Peptidase, S8 subtilisin-like peptidase; PPC, bacterial pre-peptidase C-terminal domain; Rhs, Rhs repeat domain. Accession numbers of the A. cellulolyticus scaffoldins are: [GenBank: ZP_09464033-30 (ScaA-D), ZP_09465494 (ScaE), ZP_09464236 (ScaF), ZP_09464788 (ScaG), ZP_09462752 (ScaH), ZP_09463446 (ScaI), ZP_09462222 (ScaJ), ZP_09464725 (ScaK), ZP_09464968 (ScaL), ZP_09463433 (ScaM), ZP_09463827 (ScaN), ZP_09462124 (ScaO), ZP_09461865 (ScaP)]. Accession numbers of the C. thermocellum scaffoldins are: [GenBank: CAA47840 (CipA), YP_001039467 (OlpB), ABN54275 (Orf2p), YP_001039469 (OlpA), YP_001037164 (Cthe_0736), YP_001037732 (SdbA), YP_001036883 (OlpC) and YP_001037163 (Cthe_0735)]

    Article Snippet: Draft genome sequences of Acetivibrio cellulolyticus CD2 (DSM 1870, ATCC 33288) (30 Dec. 2011), and Clostridium thermocellum ATCC 27405 (16 Feb. 2007) were obtained from GenBank (accession: AEDB00000000 and CP000568, respectively).

    Techniques: Binding Assay

    Relationship of all cohesin modules from A. cellulolyticus and C. thermocellum . Sequence-based dendrogram of cohesin modules from A. cellulolyticus (red) and C. thermocellum (blue). See scheme and key in Figure . Only significant bootstrap values are shown

    Journal: BMC Genomics

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    doi: 10.1186/1471-2164-13-210

    Figure Lengend Snippet: Relationship of all cohesin modules from A. cellulolyticus and C. thermocellum . Sequence-based dendrogram of cohesin modules from A. cellulolyticus (red) and C. thermocellum (blue). See scheme and key in Figure . Only significant bootstrap values are shown

    Article Snippet: Draft genome sequences of Acetivibrio cellulolyticus CD2 (DSM 1870, ATCC 33288) (30 Dec. 2011), and Clostridium thermocellum ATCC 27405 (16 Feb. 2007) were obtained from GenBank (accession: AEDB00000000 and CP000568, respectively).

    Techniques: Sequencing

    Sequence conservation pattern of dockerin modules. The two internal dockerin repeats of A. cellulolyticus (based on 137 sequences) and C. thermocellum (71 sequences) are represented by sequence logos. Positions of calcium binding residues are shown in cyan, and putative recognition residues are shown in yellow

    Journal: BMC Genomics

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    doi: 10.1186/1471-2164-13-210

    Figure Lengend Snippet: Sequence conservation pattern of dockerin modules. The two internal dockerin repeats of A. cellulolyticus (based on 137 sequences) and C. thermocellum (71 sequences) are represented by sequence logos. Positions of calcium binding residues are shown in cyan, and putative recognition residues are shown in yellow

    Article Snippet: Draft genome sequences of Acetivibrio cellulolyticus CD2 (DSM 1870, ATCC 33288) (30 Dec. 2011), and Clostridium thermocellum ATCC 27405 (16 Feb. 2007) were obtained from GenBank (accession: AEDB00000000 and CP000568, respectively).

    Techniques: Sequencing, Binding Assay

    Comparative distribution of dockerin-containing CAZyme modules in A. cellulolyticus vs. C. thermocellum

    Journal: BMC Genomics

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    doi: 10.1186/1471-2164-13-210

    Figure Lengend Snippet: Comparative distribution of dockerin-containing CAZyme modules in A. cellulolyticus vs. C. thermocellum

    Article Snippet: Draft genome sequences of Acetivibrio cellulolyticus CD2 (DSM 1870, ATCC 33288) (30 Dec. 2011), and Clostridium thermocellum ATCC 27405 (16 Feb. 2007) were obtained from GenBank (accession: AEDB00000000 and CP000568, respectively).

    Techniques: Genome Wide

    Summary of protein modules in cellulosomal proteins

    Journal: BMC Genomics

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    doi: 10.1186/1471-2164-13-210

    Figure Lengend Snippet: Summary of protein modules in cellulosomal proteins

    Article Snippet: Draft genome sequences of Acetivibrio cellulolyticus CD2 (DSM 1870, ATCC 33288) (30 Dec. 2011), and Clostridium thermocellum ATCC 27405 (16 Feb. 2007) were obtained from GenBank (accession: AEDB00000000 and CP000568, respectively).

    Techniques:

    Putative σ I and anti- σ I regulatory factors in Acetivibrio cellulolyticus CD2

    Journal: BMC Genomics

    Article Title: Genome-wide analysis of acetivibrio cellulolyticus provides a blueprint of an elaborate cellulosome system

    doi: 10.1186/1471-2164-13-210

    Figure Lengend Snippet: Putative σ I and anti- σ I regulatory factors in Acetivibrio cellulolyticus CD2

    Article Snippet: Draft genome sequences of Acetivibrio cellulolyticus CD2 (DSM 1870, ATCC 33288) (30 Dec. 2011), and Clostridium thermocellum ATCC 27405 (16 Feb. 2007) were obtained from GenBank (accession: AEDB00000000 and CP000568, respectively).

    Techniques: