Journal: Epigenetics

Article Title: Don’t brush off buccal data heterogeneity

doi: 10.1080/15592294.2019.1581592

Figure Lengend Snippet: Sources of DNA methylation data used in the study.

Article Snippet: Study GEO Accession Description Buccal or Saliva Collection Berko et al, 2014 {"type":"entrez-geo","attrs":{"text":"GSE50759","term_id":"50759"}} GSE50759 48 buccal autism spectrum disorder (ASD), 48 controls Gentra Puregene Buccal cell kit Jessen et al., 2018 {"type":"entrez-geo","attrs":{"text":"GSE94876","term_id":"94876"}} GSE94876 120 buccal samples related to tobacco usage Mouth rinse and swishing Jones et al, 2013 {"type":"entrez-geo","attrs":{"text":"GSE50586","term_id":"50586"}} GSE50586 10 buccal Down Syndrome samples, 10 buccal controls Isohelix Buccal DNA isolation kit Langie et al, 2016 {"type":"entrez-geo","attrs":{"text":"GSE73745","term_id":"73745"}} GSE73745 12 blood-saliva pairs: 6 controls and 6 respiratory allergy samples Oragene saliva kit (DNA Genotek) Lowe et al, 2013 {"type":"entrez-geo","attrs":{"text":"GSE46573","term_id":"46573"}} GSE46573 3 buccal control replicates Gentra Puregene Buccal cell kit Lussier et al., 2018 {"type":"entrez-geo","attrs":{"text":"GSE109042","term_id":"109042"}} GSE109042 24 buccal fetal alcohol spectrum disorder (FASD) subjects and 24 buccal controls, with additional replicates Isohelix Buccal DNA isolation kit Martino et al, 2013 {"type":"entrez-geo","attrs":{"text":"GSE42700","term_id":"42700"}} GSE42700 53 buccal samples from normal mono- and dizygotic twins Catch-All Sample Collection Swabs Portales-Casamar et al, 2016 {"type":"entrez-geo","attrs":{"text":"GSE80261","term_id":"80261"}} GSE80261 110 buccal fetal alcohol spectrum disorder (FASD) samples and 96 buccal controls Isohelix Buccal DNA isolation kit Reinius et al, 2012 {"type":"entrez-geo","attrs":{"text":"GSE35069","term_id":"35069"}} GSE35069 Purified blood cell subtypes from 6 control subjects Not applicable Slieker et al, 2013 {"type":"entrez-geo","attrs":{"text":"GSE48472","term_id":"48472"}} GSE48472 Matched buccal, blood and saliva from 5 control subjects Buccal: Chloroform/isoamyl alcohol protocol.

Techniques: DNA Methylation Assay, DNA Extraction, Purification