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Broad Institute Inc trinity software
Trinity Software, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transcriptome+assembly+software+trinity/trinity+software/pmc09694991-196-7-10
Average 90 stars, based on 1 article reviews
trinity software - by Bioz Stars, 2026-09
90/100 stars

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Article Title: An Investigation of the Saccharides Profile and Metabolic Gene Expression in Muskrat Scented Glands in Different Secretion Seasons.
Article Snippet: .. With the absence of a genome, sequenced reads were assembled using Trinity software (Broad Institute of MIT and Harvard, https://pmc.ncbi.nlm.nih.gov/articales/PMC3571712/pdf/nihms292662, accessed on 19 March 2021) with min_kmer_cov set to 2 by default and all other parameters also set to default. ..

Article Title: Identification of odorant receptors of Tribolium confusum in response to limonene repellent activity.
Article Snippet: Tribolium confusum is an important storage pest showing significant resistance to various chemical pesticides, development of botanical pesticides is an effective strategy to resolve above problem and decrease utilization of chemical pesticides.. Present study attempts to explore the molecular mechanism about the repellent activity of limonene.. When treatment concentration of limonene was 200.00 μg/cm2, the repellent level remained at grade V after 24 hours.

Article Title: Prostaglandin E₂ activates the brain-pituitary axis via olfactory pathways in male Bostrychus sinensis.
Article Snippet: Prostaglandin E2 (PGE2) has been identified as a key sex pheromone in male Bostrychus sinensis, yet its molecular and neural mechanisms remain unclear.. Here, we performed transcriptome sequencing on male B. sinensis brains following exposure to 50 nM PGE2 to uncover genes and pathways involved in reproductive regulation.. RNA-seq analysis revealed significant upregulation of key genes associated with the activation of the brain-pituitary axis.

Article Title: An Investigation of the Saccharides Profile and Metabolic Gene Expression in Muskrat Scented Glands in Different Secretion Seasons
Article Snippet: .. With the absence of a genome, sequenced reads were assembled using Trinity software (Broad Institute of MIT and Harvard, https://pmc.ncbi.nlm.nih.gov/articales/PMC3571712/pdf/nihms292662 , accessed on 19 March 2021) with min_kmer_cov set to 2 by default and all other parameters also set to default. ..

Article Title: De novo assembly, gene annotation and marker development using illumina paired-end transcriptome sequences in nutmeg ( Myristica fragrans Houtt . ).
Article Snippet: Nutmeg (Myristica fragrans) is a high-value spice crop widely utilized in culinary, medicinal, and industrial sectors.. Despite its economic and cultural significance, genetic research on nutmeg is severely limited, hindering efforts to improve its cultivation and breeding programs.. The lack of molecular markers and genetic tools has further constrained the development of superior trait varieties.

Article Title: De novo assembly and annotation of the Amblyomma hebraeum tick midgut transcriptome response to Ehrlichia ruminantium infection.
Article Snippet: .. Our gratitude also extends to Brian Haas from the Broad Institute, Cambridge, Massachusetts, for his technical assistance with the Trinity software. ..

Article Title: Genome-Wide Characterization of Differentially Expressed Scent Genes in the MEP Control Network of the Flower of Lilium 'Sorbonne'.
Article Snippet: Fragrance is an important feature of ornamental lilies.. Components of volatile substances and important genes for monoterpene synthesis in the 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway were examined in this study.. Twenty volatile compounds (2 in the budding stage, 3 in the initial flowering stage, 7 in the semi-flowering stage, 17 in the full-flowering stage, and 5 in withering stage) were detected in the Oriental lily ‘Sorbonne’ using gas chromatography–mass spectrometry.

RNA sequencing:

Article Title: De novo assembly, gene annotation and marker development using illumina paired-end transcriptome sequences in nutmeg ( Myristica fragrans Houtt . ).
Article Snippet: Nutmeg (Myristica fragrans) is a high-value spice crop widely utilized in culinary, medicinal, and industrial sectors.. Despite its economic and cultural significance, genetic research on nutmeg is severely limited, hindering efforts to improve its cultivation and breeding programs.. The lack of molecular markers and genetic tools has further constrained the development of superior trait varieties.



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