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Journal: Biosafety and Health
Article Title: Genetic characterizations and molecular epidemiology of human echovirus 30 isolated from Ningxia, China
doi: 10.1016/j.bsheal.2023.10.001
Figure Lengend Snippet: Similarity plot analysis comparing strain Ningxia echovirus 30 (E30) with enterovirus B (EV-B) strains, based on the full-length genomes. The 2017 E30 strains were used independently as query sequences. The nucleotide sequence of each strain was compared with those of strains of EV-B, using Simplot software version 3.5.1, with a sliding window of 200 nucleotides moving in steps of 20. Colored lines indicate the strains described in this article, and other strains are indicated by gray lines. The whole genome Simplot BootScan analysis was conducted with the query sequence of NX2017E30 strain. A) The enterovirus genomic organization is shown at the top. B) Similarity plot analysis. C) Bootscanning analysis on the putative recombinant strain and its parental sequences.
Article Snippet: The whole
Techniques: Sequencing, Software, Recombinant