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Structured Review

MacVector inc sequence analysis software
Sequence Analysis Software, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequencing+data+analysis+software/sequence+analysis+software/pmc07857415-158-0-5
Average 90 stars, based on 1 article reviews
sequence analysis software - by Bioz Stars, 2026-09
90/100 stars

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Article Title: RU486 Induces Pro-Apoptotic Endoplasmic Reticulum Stress Through the Induction of CHOP Expression by Enhancing C/EBPδ Expression in Human Renal Carcinoma Caki Cells.
Article Snippet: RU486 (Mifepristone) is known as an antagonist of the progesterone receptor and glucocorticoid receptor.. Here, we investigated the mechanism underlying anti-tumor activity of RU486 in renal carcinoma Caki cells.. Treatment of Caki cells with RU486 was found to induce several signature ER stress markers; including ER stress-specific XBP1 splicing, and the up-regulation of glucose-regulated protein (GRP)-78 and CCAAT/enhancer-binding protein homologous protein (CHOP) expression.

Sequencing:

Article Title: Enhanced SARS-CoV-2 neutralization by dimeric IgA
Article Snippet: Briefly, RNA from single cells was reverse-transcribed (18080-044; SuperScript III Reverse Transcriptase, Invitrogen) using random primers (48190011; Invitrogen) and followed by nested PCR amplifications and sequencing using the primers for heavy chain that are listed in data file S5 and primers for light chains from ( ). .. Sequence analysis was performed with MacVector. ..

Article Title: Arbuscular Mycorrhizal Fungi Associated with Rice (Oryza sativa L.) in Ghana: Effect of Regional Locations and Soil Factors on Diversity and Community Assembly
Article Snippet: .. The sequences were aligned using the MacVector sequence analysis tool (https://macvector.com). ..

Article Title: Immunotherapy during the acute SHIV infection of macaques confers long-term suppression of viremia
Article Snippet: Plasmid DNA was extracted and purified using the QIAPrep SpinPrep miniprep kit (Qiagen). .. Sequences were aligned using MacVector sequence analysis software (MacVector Inc.) starting from the first three codons of gp120 (ATGAAAGTG) and stopping after nt 8730 regardless of primers used. .. Sequence alignments were evaluated using the Model Tool in MEGA X for macOS ( ) to find the most appropriate substitution modeling parameters, for which the software recommended the Hasegawa-Kishino-Yano model with Gamma distribution and invariant rate among sites (HKY+G+I; ).

Article Title: Convergent Antibody Responses to SARS-CoV-2 in Convalescent Individuals
Article Snippet: .. Sequence analysis was with MacVector. ..

Article Title: Naturally enhanced neutralizing breadth against SARS-CoV-2 one year after infection.
Article Snippet: In brief, RNA from single cells was reverse transcribed (SuperScript III Reverse Transcriptase, Invitrogen, 18080-044) and the cDNA stored at −20 °C or used for subsequent amplification of the variable IGH, IGL and IGK genes by nested PCR and Sanger sequencing. .. Sequence analysis was performed using MacVector. ..

Article Title: Prevention and treatment of SHIVAD8 infection in rhesus macaques by a potent d-peptide HIV entry inhibitor.
Article Snippet: .. Sequences were aligned using MacVector sequence analysis software. ..

Article Title: Adeno-Associated Virus Production, Purification, and Titering.
Article Snippet: Adeno-associated virus (AAV) vectors are exemplary tools for studying gene function in vivo and are particularly favorable for transferring genes of interest into brain tissues.. They have shown great promise as a gene therapy vector for preclinical and clinical applications.. However, the ability to use this tool is often hampered because the viruses themselves are not readily available.

Software:

Article Title: Immunotherapy during the acute SHIV infection of macaques confers long-term suppression of viremia
Article Snippet: Plasmid DNA was extracted and purified using the QIAPrep SpinPrep miniprep kit (Qiagen). .. Sequences were aligned using MacVector sequence analysis software (MacVector Inc.) starting from the first three codons of gp120 (ATGAAAGTG) and stopping after nt 8730 regardless of primers used. .. Sequence alignments were evaluated using the Model Tool in MEGA X for macOS ( ) to find the most appropriate substitution modeling parameters, for which the software recommended the Hasegawa-Kishino-Yano model with Gamma distribution and invariant rate among sites (HKY+G+I; ).

Article Title: Prevention and treatment of SHIVAD8 infection in rhesus macaques by a potent d-peptide HIV entry inhibitor.
Article Snippet: .. Sequences were aligned using MacVector sequence analysis software. ..

Article Title: Adeno-Associated Virus Production, Purification, and Titering.
Article Snippet: Adeno-associated virus (AAV) vectors are exemplary tools for studying gene function in vivo and are particularly favorable for transferring genes of interest into brain tissues.. They have shown great promise as a gene therapy vector for preclinical and clinical applications.. However, the ability to use this tool is often hampered because the viruses themselves are not readily available.



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