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Incubation:

Article Title: Abolishing PorB-induced mitophagy enhances gonococcal outer membrane vesicle vaccine efficacy
Article Snippet: For co-localization analysis between mitochondria and LC3 or lysosomes, mature DCs (1 × 106 cells per group) were stimulated for 4 h with 20 μg of OMV-PorB WT or OMV-PorB K117Q/K171Q or with a PBS-only Mock control and subsequently fixed with 4% paraformaldehyde (Biosharp). .. Fixed cells were blocked and permeabilized with QuickBlock buffer (Beyotime), transferred onto poly-lysine-coated slides (Solarbio), and incubated overnight at 4 °C with mouse anti-HSP60 (Santa Cruz, #sc-13115), rabbit anti-LC3B (Huabio, #ET1701-65), rabbit anti-LAMP1 (Huabio, #HA722302) or mouse anti-TOM20 (Huabio, # HA601454 ). .. Subsequently, slides were incubated for 1 h at room temperature with Alexa Fluor 488 goat anti-mouse (Proteintech, #RGAM002) or Alexa Fluor 594 goat anti-rabbit (Lablead, #Y1007) and nuclei were counterstained with 10 μg/mL DAPI (Solarbio).

Article Title: ncRNA Network Pharmacology Integrated with miRNA Omics and Experimental Validation Reveal the Anti-autophagic Effect of Xuefu Zhuyu Decoction in Traumatic Brain Injury.
Article Snippet: 36 Ethnopharmacological relevance: Traumatic brain injury (TBI) is a major cause of 37 death and long-term disability in humans.. Xuefu Zhuyu Decoction (XFZYD) has 38 potential therapeutic effects on TBI, but its molecular mechanism involving non-coding 39 RNAs (ncRNAs) remains unclear.. 40 Aim of the study: To elucidate the mechanism of XFZYD, this study proposed an 41 integrated ncRNA-based network pharmacology (ncRNP) strategy, combined with 42 multi-omics analysis, in vivo and in vitro experiments.

Article Title: Programmable, target-induced fluorogenic CRISPR–tDeg platform for live-cell RNA visualization
Article Snippet: Equal amounts of protein were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (Bio-Rad Mini PROTEAN system) and transferred to PVDF membranes using a semi-dry transfer apparatus (Bio-Rad). .. Membranes were blocked with 5% skim milk in TBST for 1 h at room temperature and then incubated overnight at 4°C with the following primary antibodies: rabbit anti-sfGFP (HUABIO, 1:1000), rabbit anti-N protein (Sino Biological, 1:1000), and mouse anti-β-actin (Cell Signaling Technology, 1:3000). ..

Lysis:

Article Title: Apolipoprotein D neofunctionalization couples lipid allocation to wing evolution.
Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models Bombyx mori Zhejiang University N/A Spodoptera frugiperda Zhejiang University N/A Antibodies Rabbit anti-p-AMPKα (Ser473) Cell Signaling Technology Cat# 2535 Rabbit anti-AMPKα Abcam Cat# ab80039 Rabbit anti-Lkb1 HuaBio Cat# HA500143 Rabbit anti-ATG8 Lu et al, 2023 N/A Rabbit anti-Beclin-1 Proteintech Cat# 11306-1- AP Reagent/resource Reference or source Identifier or catalog number Rabbit anti-p62/SQSTM1 ABclonal Cat# A18679 Rabbit anti-ULK1 ABclonal Cat# A8529 Rabbit anti-Tubulin Wang et al, 2009 N/A HRP Goat Anti-Rabbit IgG DINGGUO CHANGSHENG Cat# IH-0011 Chemicals, enzymes and other reagents RIPA lysis buffer Verde Bio (Fryd Bio) Cat# FD009 PMSF Shanghai Biotech Cat# A610425 Dichloromethane Thermo Fisher Cat# A454-4 Methanol Thermo Fisher Cat# A998-4 Isopropanol Sinopharm Chemical Analytical grade Acetonitrile Thermo Fisher N/A n-Hexane Sinopharm Chemical Analytical grade Ammonium formate Honeywell Fluka Cat# 17843- 250 G Formic acid DIMKA Cat# 50144- 50mL BSA Merck Cat# 9048- 46-8 PBS Biosharp Cat# BL601A DMSO Biosharp Cat# BS087 Trizol (RNAiso Plus) Takara Cat# 9109 Acridine Orange (AO) Merck Cat# 65-61-2 Propidium Iodide (PI) Merck Cat# P4170 PVDF membrane Merck Millipore Cat# IPVH00010 ECL chemiluminescent substrate Fdbio Science Biotech Cat# FD8020 Software DIAMOND v2.0.11 https://github.com/bbuchfink/ diamond N/A MAFFT v6.861 https://mafft.cbrc.jp/ alignment/software/ N/A TrimAl v1.4.1 https://vicfero.github.io/ trimal/ N/A IQ-TREE v1.5.5 http://www.iqtree.org/ N/A iTOL v6.4.3 https://itol.embl.de/ N/A SOAPnuke v1.4.0 https://github.com/BGIflexlab/SOAPnuke N/A Figure 5. scRNA-seq analysis of wild-type and ApoD2−/− mutant wings at the cell cluster level. (A) Uniform manifold approximation and projection (UMAP) clustering identified 18 overlapping clusters. (B) Proportion of cells in each cluster for WT (blue) and ApoD2−/− mutant (red) across the four wing cell types. (C) Pathway enrichment analysis of clusters PM2–PM5 and PH2. (D) Violin plots showing cluster-specific changes in gene expression for the Notch signaling pathway. (E) Violin plots depicting cluster-specific changes in gene expression for cell development-related genes. (F) Violin plots illustrating cluster-specific changes in gene expression for lipid-related pathways. (G) Violin plots displaying cluster-specific changes in gene expression for autophagy-related pathways. ..

Membrane:

Article Title: Apolipoprotein D neofunctionalization couples lipid allocation to wing evolution.
Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models Bombyx mori Zhejiang University N/A Spodoptera frugiperda Zhejiang University N/A Antibodies Rabbit anti-p-AMPKα (Ser473) Cell Signaling Technology Cat# 2535 Rabbit anti-AMPKα Abcam Cat# ab80039 Rabbit anti-Lkb1 HuaBio Cat# HA500143 Rabbit anti-ATG8 Lu et al, 2023 N/A Rabbit anti-Beclin-1 Proteintech Cat# 11306-1- AP Reagent/resource Reference or source Identifier or catalog number Rabbit anti-p62/SQSTM1 ABclonal Cat# A18679 Rabbit anti-ULK1 ABclonal Cat# A8529 Rabbit anti-Tubulin Wang et al, 2009 N/A HRP Goat Anti-Rabbit IgG DINGGUO CHANGSHENG Cat# IH-0011 Chemicals, enzymes and other reagents RIPA lysis buffer Verde Bio (Fryd Bio) Cat# FD009 PMSF Shanghai Biotech Cat# A610425 Dichloromethane Thermo Fisher Cat# A454-4 Methanol Thermo Fisher Cat# A998-4 Isopropanol Sinopharm Chemical Analytical grade Acetonitrile Thermo Fisher N/A n-Hexane Sinopharm Chemical Analytical grade Ammonium formate Honeywell Fluka Cat# 17843- 250 G Formic acid DIMKA Cat# 50144- 50mL BSA Merck Cat# 9048- 46-8 PBS Biosharp Cat# BL601A DMSO Biosharp Cat# BS087 Trizol (RNAiso Plus) Takara Cat# 9109 Acridine Orange (AO) Merck Cat# 65-61-2 Propidium Iodide (PI) Merck Cat# P4170 PVDF membrane Merck Millipore Cat# IPVH00010 ECL chemiluminescent substrate Fdbio Science Biotech Cat# FD8020 Software DIAMOND v2.0.11 https://github.com/bbuchfink/ diamond N/A MAFFT v6.861 https://mafft.cbrc.jp/ alignment/software/ N/A TrimAl v1.4.1 https://vicfero.github.io/ trimal/ N/A IQ-TREE v1.5.5 http://www.iqtree.org/ N/A iTOL v6.4.3 https://itol.embl.de/ N/A SOAPnuke v1.4.0 https://github.com/BGIflexlab/SOAPnuke N/A Figure 5. scRNA-seq analysis of wild-type and ApoD2−/− mutant wings at the cell cluster level. (A) Uniform manifold approximation and projection (UMAP) clustering identified 18 overlapping clusters. (B) Proportion of cells in each cluster for WT (blue) and ApoD2−/− mutant (red) across the four wing cell types. (C) Pathway enrichment analysis of clusters PM2–PM5 and PH2. (D) Violin plots showing cluster-specific changes in gene expression for the Notch signaling pathway. (E) Violin plots depicting cluster-specific changes in gene expression for cell development-related genes. (F) Violin plots illustrating cluster-specific changes in gene expression for lipid-related pathways. (G) Violin plots displaying cluster-specific changes in gene expression for autophagy-related pathways. ..

Software:

Article Title: Apolipoprotein D neofunctionalization couples lipid allocation to wing evolution.
Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models Bombyx mori Zhejiang University N/A Spodoptera frugiperda Zhejiang University N/A Antibodies Rabbit anti-p-AMPKα (Ser473) Cell Signaling Technology Cat# 2535 Rabbit anti-AMPKα Abcam Cat# ab80039 Rabbit anti-Lkb1 HuaBio Cat# HA500143 Rabbit anti-ATG8 Lu et al, 2023 N/A Rabbit anti-Beclin-1 Proteintech Cat# 11306-1- AP Reagent/resource Reference or source Identifier or catalog number Rabbit anti-p62/SQSTM1 ABclonal Cat# A18679 Rabbit anti-ULK1 ABclonal Cat# A8529 Rabbit anti-Tubulin Wang et al, 2009 N/A HRP Goat Anti-Rabbit IgG DINGGUO CHANGSHENG Cat# IH-0011 Chemicals, enzymes and other reagents RIPA lysis buffer Verde Bio (Fryd Bio) Cat# FD009 PMSF Shanghai Biotech Cat# A610425 Dichloromethane Thermo Fisher Cat# A454-4 Methanol Thermo Fisher Cat# A998-4 Isopropanol Sinopharm Chemical Analytical grade Acetonitrile Thermo Fisher N/A n-Hexane Sinopharm Chemical Analytical grade Ammonium formate Honeywell Fluka Cat# 17843- 250 G Formic acid DIMKA Cat# 50144- 50mL BSA Merck Cat# 9048- 46-8 PBS Biosharp Cat# BL601A DMSO Biosharp Cat# BS087 Trizol (RNAiso Plus) Takara Cat# 9109 Acridine Orange (AO) Merck Cat# 65-61-2 Propidium Iodide (PI) Merck Cat# P4170 PVDF membrane Merck Millipore Cat# IPVH00010 ECL chemiluminescent substrate Fdbio Science Biotech Cat# FD8020 Software DIAMOND v2.0.11 https://github.com/bbuchfink/ diamond N/A MAFFT v6.861 https://mafft.cbrc.jp/ alignment/software/ N/A TrimAl v1.4.1 https://vicfero.github.io/ trimal/ N/A IQ-TREE v1.5.5 http://www.iqtree.org/ N/A iTOL v6.4.3 https://itol.embl.de/ N/A SOAPnuke v1.4.0 https://github.com/BGIflexlab/SOAPnuke N/A Figure 5. scRNA-seq analysis of wild-type and ApoD2−/− mutant wings at the cell cluster level. (A) Uniform manifold approximation and projection (UMAP) clustering identified 18 overlapping clusters. (B) Proportion of cells in each cluster for WT (blue) and ApoD2−/− mutant (red) across the four wing cell types. (C) Pathway enrichment analysis of clusters PM2–PM5 and PH2. (D) Violin plots showing cluster-specific changes in gene expression for the Notch signaling pathway. (E) Violin plots depicting cluster-specific changes in gene expression for cell development-related genes. (F) Violin plots illustrating cluster-specific changes in gene expression for lipid-related pathways. (G) Violin plots displaying cluster-specific changes in gene expression for autophagy-related pathways. ..

Mutagenesis:

Article Title: Apolipoprotein D neofunctionalization couples lipid allocation to wing evolution.
Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models Bombyx mori Zhejiang University N/A Spodoptera frugiperda Zhejiang University N/A Antibodies Rabbit anti-p-AMPKα (Ser473) Cell Signaling Technology Cat# 2535 Rabbit anti-AMPKα Abcam Cat# ab80039 Rabbit anti-Lkb1 HuaBio Cat# HA500143 Rabbit anti-ATG8 Lu et al, 2023 N/A Rabbit anti-Beclin-1 Proteintech Cat# 11306-1- AP Reagent/resource Reference or source Identifier or catalog number Rabbit anti-p62/SQSTM1 ABclonal Cat# A18679 Rabbit anti-ULK1 ABclonal Cat# A8529 Rabbit anti-Tubulin Wang et al, 2009 N/A HRP Goat Anti-Rabbit IgG DINGGUO CHANGSHENG Cat# IH-0011 Chemicals, enzymes and other reagents RIPA lysis buffer Verde Bio (Fryd Bio) Cat# FD009 PMSF Shanghai Biotech Cat# A610425 Dichloromethane Thermo Fisher Cat# A454-4 Methanol Thermo Fisher Cat# A998-4 Isopropanol Sinopharm Chemical Analytical grade Acetonitrile Thermo Fisher N/A n-Hexane Sinopharm Chemical Analytical grade Ammonium formate Honeywell Fluka Cat# 17843- 250 G Formic acid DIMKA Cat# 50144- 50mL BSA Merck Cat# 9048- 46-8 PBS Biosharp Cat# BL601A DMSO Biosharp Cat# BS087 Trizol (RNAiso Plus) Takara Cat# 9109 Acridine Orange (AO) Merck Cat# 65-61-2 Propidium Iodide (PI) Merck Cat# P4170 PVDF membrane Merck Millipore Cat# IPVH00010 ECL chemiluminescent substrate Fdbio Science Biotech Cat# FD8020 Software DIAMOND v2.0.11 https://github.com/bbuchfink/ diamond N/A MAFFT v6.861 https://mafft.cbrc.jp/ alignment/software/ N/A TrimAl v1.4.1 https://vicfero.github.io/ trimal/ N/A IQ-TREE v1.5.5 http://www.iqtree.org/ N/A iTOL v6.4.3 https://itol.embl.de/ N/A SOAPnuke v1.4.0 https://github.com/BGIflexlab/SOAPnuke N/A Figure 5. scRNA-seq analysis of wild-type and ApoD2−/− mutant wings at the cell cluster level. (A) Uniform manifold approximation and projection (UMAP) clustering identified 18 overlapping clusters. (B) Proportion of cells in each cluster for WT (blue) and ApoD2−/− mutant (red) across the four wing cell types. (C) Pathway enrichment analysis of clusters PM2–PM5 and PH2. (D) Violin plots showing cluster-specific changes in gene expression for the Notch signaling pathway. (E) Violin plots depicting cluster-specific changes in gene expression for cell development-related genes. (F) Violin plots illustrating cluster-specific changes in gene expression for lipid-related pathways. (G) Violin plots displaying cluster-specific changes in gene expression for autophagy-related pathways. ..

Gene Expression:

Article Title: Apolipoprotein D neofunctionalization couples lipid allocation to wing evolution.
Article Snippet: .. Reagents and tools table Reagent/resource Reference or source Identifier or catalog number Experimental models Bombyx mori Zhejiang University N/A Spodoptera frugiperda Zhejiang University N/A Antibodies Rabbit anti-p-AMPKα (Ser473) Cell Signaling Technology Cat# 2535 Rabbit anti-AMPKα Abcam Cat# ab80039 Rabbit anti-Lkb1 HuaBio Cat# HA500143 Rabbit anti-ATG8 Lu et al, 2023 N/A Rabbit anti-Beclin-1 Proteintech Cat# 11306-1- AP Reagent/resource Reference or source Identifier or catalog number Rabbit anti-p62/SQSTM1 ABclonal Cat# A18679 Rabbit anti-ULK1 ABclonal Cat# A8529 Rabbit anti-Tubulin Wang et al, 2009 N/A HRP Goat Anti-Rabbit IgG DINGGUO CHANGSHENG Cat# IH-0011 Chemicals, enzymes and other reagents RIPA lysis buffer Verde Bio (Fryd Bio) Cat# FD009 PMSF Shanghai Biotech Cat# A610425 Dichloromethane Thermo Fisher Cat# A454-4 Methanol Thermo Fisher Cat# A998-4 Isopropanol Sinopharm Chemical Analytical grade Acetonitrile Thermo Fisher N/A n-Hexane Sinopharm Chemical Analytical grade Ammonium formate Honeywell Fluka Cat# 17843- 250 G Formic acid DIMKA Cat# 50144- 50mL BSA Merck Cat# 9048- 46-8 PBS Biosharp Cat# BL601A DMSO Biosharp Cat# BS087 Trizol (RNAiso Plus) Takara Cat# 9109 Acridine Orange (AO) Merck Cat# 65-61-2 Propidium Iodide (PI) Merck Cat# P4170 PVDF membrane Merck Millipore Cat# IPVH00010 ECL chemiluminescent substrate Fdbio Science Biotech Cat# FD8020 Software DIAMOND v2.0.11 https://github.com/bbuchfink/ diamond N/A MAFFT v6.861 https://mafft.cbrc.jp/ alignment/software/ N/A TrimAl v1.4.1 https://vicfero.github.io/ trimal/ N/A IQ-TREE v1.5.5 http://www.iqtree.org/ N/A iTOL v6.4.3 https://itol.embl.de/ N/A SOAPnuke v1.4.0 https://github.com/BGIflexlab/SOAPnuke N/A Figure 5. scRNA-seq analysis of wild-type and ApoD2−/− mutant wings at the cell cluster level. (A) Uniform manifold approximation and projection (UMAP) clustering identified 18 overlapping clusters. (B) Proportion of cells in each cluster for WT (blue) and ApoD2−/− mutant (red) across the four wing cell types. (C) Pathway enrichment analysis of clusters PM2–PM5 and PH2. (D) Violin plots showing cluster-specific changes in gene expression for the Notch signaling pathway. (E) Violin plots depicting cluster-specific changes in gene expression for cell development-related genes. (F) Violin plots illustrating cluster-specific changes in gene expression for lipid-related pathways. (G) Violin plots displaying cluster-specific changes in gene expression for autophagy-related pathways. ..

Blocking Assay:

Article Title: ncRNA Network Pharmacology Integrated with miRNA Omics and Experimental Validation Reveal the Anti-autophagic Effect of Xuefu Zhuyu Decoction in Traumatic Brain Injury.
Article Snippet: 36 Ethnopharmacological relevance: Traumatic brain injury (TBI) is a major cause of 37 death and long-term disability in humans.. Xuefu Zhuyu Decoction (XFZYD) has 38 potential therapeutic effects on TBI, but its molecular mechanism involving non-coding 39 RNAs (ncRNAs) remains unclear.. 40 Aim of the study: To elucidate the mechanism of XFZYD, this study proposed an 41 integrated ncRNA-based network pharmacology (ncRNP) strategy, combined with 42 multi-omics analysis, in vivo and in vitro experiments.



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Image Search Results


Antibodies used in this study.

Journal: Pediatric Discovery

Article Title: Early Growth Response 1‐Associated Epithelial Autophagy‐Related Changes in Allergic Airway Inflammation

doi: 10.1002/pdi3.70075

Figure Lengend Snippet: Antibodies used in this study.

Article Snippet: LC3B rabbit mAb , ABclonal , A19665 , ARC0144.

Techniques: Cell-Signaling

House dust mite (HDM) stimulation induces early growth response 1 (EGR1) expression and autophagy‐associated changes in airway epithelial cells. (A–C) EGR1 mRNA and protein levels in BEAS‐2B cells stimulated with HDM extract (30 μg/mL, 3 hours) or vehicle control, assessed by quantitative polymerase chain reaction (qPCR) and Western blot. (D–F) Western blot analysis of LC3B and p62 protein levels. The LC3B‐II/I ratio was quantified by densitometry. (G) Representative immunofluorescence images of LC3B puncta (green) in BEAS‐2B cells. Nuclei were counterstained with DAPI (blue). Scale bar, 20 μm. (H) IL‐33 release into culture supernatants measured by ELISA. (I) Airway resistance in response to increasing concentrations of methacholine in HDM‐challenged mice and controls. Data were analyzed using repeated‐measures ANOVA. (J) Representative hematoxylin and eosin‐stained lung tissue sections. Scale bar, 100 μm. (K–M) Immunofluorescence detection of EGR1 (red) and LC3B (green) in lung tissue sections. Nuclei were stained with DAPI (blue). Fluorescence intensity was quantified and normalized to the control. Data are presented as mean ± standard deviation. For in vitro experiments: (A, G) n = 3 independent experiments; (B–F) n = 4 independent experiments. For in vivo experiments: n = 4 mice per group. Statistical significance was determined by an unpaired Student's t ‐test unless otherwise indicated. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001. ns, not significant.

Journal: Pediatric Discovery

Article Title: Early Growth Response 1‐Associated Epithelial Autophagy‐Related Changes in Allergic Airway Inflammation

doi: 10.1002/pdi3.70075

Figure Lengend Snippet: House dust mite (HDM) stimulation induces early growth response 1 (EGR1) expression and autophagy‐associated changes in airway epithelial cells. (A–C) EGR1 mRNA and protein levels in BEAS‐2B cells stimulated with HDM extract (30 μg/mL, 3 hours) or vehicle control, assessed by quantitative polymerase chain reaction (qPCR) and Western blot. (D–F) Western blot analysis of LC3B and p62 protein levels. The LC3B‐II/I ratio was quantified by densitometry. (G) Representative immunofluorescence images of LC3B puncta (green) in BEAS‐2B cells. Nuclei were counterstained with DAPI (blue). Scale bar, 20 μm. (H) IL‐33 release into culture supernatants measured by ELISA. (I) Airway resistance in response to increasing concentrations of methacholine in HDM‐challenged mice and controls. Data were analyzed using repeated‐measures ANOVA. (J) Representative hematoxylin and eosin‐stained lung tissue sections. Scale bar, 100 μm. (K–M) Immunofluorescence detection of EGR1 (red) and LC3B (green) in lung tissue sections. Nuclei were stained with DAPI (blue). Fluorescence intensity was quantified and normalized to the control. Data are presented as mean ± standard deviation. For in vitro experiments: (A, G) n = 3 independent experiments; (B–F) n = 4 independent experiments. For in vivo experiments: n = 4 mice per group. Statistical significance was determined by an unpaired Student's t ‐test unless otherwise indicated. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001. ns, not significant.

Article Snippet: LC3B rabbit mAb , ABclonal , A19665 , ARC0144.

Techniques: Expressing, Control, Real-time Polymerase Chain Reaction, Western Blot, Analysis, Immunofluorescence, Enzyme-linked Immunosorbent Assay, Staining, Tissue, Fluorescence, Standard Deviation, In Vitro, In Vivo

Validation of early growth indicaton 1 ( EGR1 ) overexpression and knockdown efficiency, and the effects on autophagy‐related proteins and IL‐33 release in house dust mite (HDM)‐stimulated BEAS‐2B cells. (A–C) EGR1 mRNA and EGR1 protein levels in cells transfected with the EGR1 overexpression plasmid (oe‐EGR1) or empty vector, assessed by quantitative polymerase chain reaction (qPCR) and Western blot. (D–F) EGR1 mRNA and ERG1 protein levels in cells transfected with EGR1‐targeting siRNA (si‐EGR1) or scrambled control, assessed by qPCR and Western blot. (G–I) Western blot analysis of LC3B and p62 in oe‐EGR1‐transfected cells, followed by HDM stimulation (30 μg/mL, 3 h). The LC3B‐II/I ratio and p62 levels were quantified by densitometry. (J) IL‐33 release into culture supernatants under the same conditions, measured by ELISA. (K–M) Western blot analysis of LC3B and p62 in si‐EGR1‐transfected cells with HDM stimulation. (N) Corresponding IL‐33 release measured by ELISA. (O–P) Immunofluorescence detection of LC3B puncta (green) in oe‐EGR1 and si‐EGR1 cells stimulated with HDM. Nuclei were stained with DAPI (blue). Scale bar, 20 μm. All data are presented as mean ± standard deviation ( n = 3 independent experiments). Statistical significance for panels (A–P) was determined by one‐way ANOVA followed by appropriate post‐hoc tests. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001. ns, not significant.

Journal: Pediatric Discovery

Article Title: Early Growth Response 1‐Associated Epithelial Autophagy‐Related Changes in Allergic Airway Inflammation

doi: 10.1002/pdi3.70075

Figure Lengend Snippet: Validation of early growth indicaton 1 ( EGR1 ) overexpression and knockdown efficiency, and the effects on autophagy‐related proteins and IL‐33 release in house dust mite (HDM)‐stimulated BEAS‐2B cells. (A–C) EGR1 mRNA and EGR1 protein levels in cells transfected with the EGR1 overexpression plasmid (oe‐EGR1) or empty vector, assessed by quantitative polymerase chain reaction (qPCR) and Western blot. (D–F) EGR1 mRNA and ERG1 protein levels in cells transfected with EGR1‐targeting siRNA (si‐EGR1) or scrambled control, assessed by qPCR and Western blot. (G–I) Western blot analysis of LC3B and p62 in oe‐EGR1‐transfected cells, followed by HDM stimulation (30 μg/mL, 3 h). The LC3B‐II/I ratio and p62 levels were quantified by densitometry. (J) IL‐33 release into culture supernatants under the same conditions, measured by ELISA. (K–M) Western blot analysis of LC3B and p62 in si‐EGR1‐transfected cells with HDM stimulation. (N) Corresponding IL‐33 release measured by ELISA. (O–P) Immunofluorescence detection of LC3B puncta (green) in oe‐EGR1 and si‐EGR1 cells stimulated with HDM. Nuclei were stained with DAPI (blue). Scale bar, 20 μm. All data are presented as mean ± standard deviation ( n = 3 independent experiments). Statistical significance for panels (A–P) was determined by one‐way ANOVA followed by appropriate post‐hoc tests. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001. ns, not significant.

Article Snippet: LC3B rabbit mAb , ABclonal , A19665 , ARC0144.

Techniques: Biomarker Discovery, Over Expression, Knockdown, Transfection, Plasmid Preparation, Real-time Polymerase Chain Reaction, Western Blot, Control, Analysis, Enzyme-linked Immunosorbent Assay, Immunofluorescence, Staining, Standard Deviation

PI3K‐III (Vps34) protein levels in response to house dust mite (HDM) and early growth response 1 (EGR1) manipulation, and the impact of 3‐methyladenine (3‐MA) on autophagy and IL‐33 release in EGR1‐overexpressing cells. (A–B) Western blot analysis and quantification of Vps34 protein levels in BEAS‐2B cells stimulated with HDM extract (30 μg/mL, 3 h) or vehicle control. (C–D) Western blot analysis of Vps34 protein levels in cells transfected with oe‐EGR1 or empty vector, with or without HDM stimulation. (E–F) Western blot analysis of Vps34 protein levels in cells transfected with si‐EGR1 or scrambled control, with or without HDM stimulation. (G–I) Western blot analysis of LC3B and p62 in oe‐EGR1‐transfected cells treated with or without Class III PI3K inhibitor 3‐methyladenine (3‐MA, 10 mmol/L, 6 h). (J) IL‐33 release in the same experimental setting, measured by ELISA. All data are presented as mean ± standard deviation ( n = 3 independent experiments). For panels (A–B), statistical significance was determined by an unpaired Student's t ‐test. For panels (C–J), one‐way ANOVA followed by appropriate post‐hoc tests was used. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001. ns, not significant.

Journal: Pediatric Discovery

Article Title: Early Growth Response 1‐Associated Epithelial Autophagy‐Related Changes in Allergic Airway Inflammation

doi: 10.1002/pdi3.70075

Figure Lengend Snippet: PI3K‐III (Vps34) protein levels in response to house dust mite (HDM) and early growth response 1 (EGR1) manipulation, and the impact of 3‐methyladenine (3‐MA) on autophagy and IL‐33 release in EGR1‐overexpressing cells. (A–B) Western blot analysis and quantification of Vps34 protein levels in BEAS‐2B cells stimulated with HDM extract (30 μg/mL, 3 h) or vehicle control. (C–D) Western blot analysis of Vps34 protein levels in cells transfected with oe‐EGR1 or empty vector, with or without HDM stimulation. (E–F) Western blot analysis of Vps34 protein levels in cells transfected with si‐EGR1 or scrambled control, with or without HDM stimulation. (G–I) Western blot analysis of LC3B and p62 in oe‐EGR1‐transfected cells treated with or without Class III PI3K inhibitor 3‐methyladenine (3‐MA, 10 mmol/L, 6 h). (J) IL‐33 release in the same experimental setting, measured by ELISA. All data are presented as mean ± standard deviation ( n = 3 independent experiments). For panels (A–B), statistical significance was determined by an unpaired Student's t ‐test. For panels (C–J), one‐way ANOVA followed by appropriate post‐hoc tests was used. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001. ns, not significant.

Article Snippet: LC3B rabbit mAb , ABclonal , A19665 , ARC0144.

Techniques: Western Blot, Analysis, Control, Transfection, Plasmid Preparation, Enzyme-linked Immunosorbent Assay, Standard Deviation