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mega 6 software  (Biodesign International Inc)

 
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    Biodesign International Inc mega 6 software
    Mega 6 Software, supplied by Biodesign International Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mega6+program/mega+software/pmc09128684-23-26-29
    Average 86 stars, based on 1 article reviews
    mega 6 software - by Bioz Stars, 2026-09
    86/100 stars

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    Article Title: Molecular detection and phylogenetic analysis of feline panleukopenia virus in domestic cat population of Mizoram state, India
    Article Snippet: The amplified product was purified using the GeneJet Gel Extraction Kit (K0691, Thermo Scientific), cloned in PTZ57R/T vector and sequenced at DNA sequencing facility, Delhi University, South Campus, New Delhi. .. The generated sequences were analyzed using Mega Software (version X; Biodesign Institute, Tempe, USA), and submitted to GenBank ® , NCBI, and the accession numbers were obtained (accession no PP035815 , PP035816 and PP035817 ). ..

    Software:

    Article Title: Molecular detection and phylogenetic analysis of feline panleukopenia virus in domestic cat population of Mizoram state, India
    Article Snippet: The amplified product was purified using the GeneJet Gel Extraction Kit (K0691, Thermo Scientific), cloned in PTZ57R/T vector and sequenced at DNA sequencing facility, Delhi University, South Campus, New Delhi. .. The generated sequences were analyzed using Mega Software (version X; Biodesign Institute, Tempe, USA), and submitted to GenBank ® , NCBI, and the accession numbers were obtained (accession no PP035815 , PP035816 and PP035817 ). ..

    Article Title: Sheep-Derived Lactobacillus johnsonii M5 Enhances Immunity and Antioxidant Capacity, Alleviates Diarrhea, and Improves Intestinal Health in Early-Weaned Lambs.
    Article Snippet: Sequence similarity values were identified using the BLAST tool version 2.2.26 of the National Center for Biotechnology Information (NCBI, Rockville, MD, USA). .. A phylogenetic tree for nucleotide sequences was constructed based on 16S rRNA gene sequences using MEGA software version 7.0 (The Biodesign Institute, Tempe, AZ, USA). ..

    Article Title: Molecular epizootiology of bovine ephemeral fever virus in Iran during 2015 to 2022
    Article Snippet: The obtained sequences were assembled using Geneious software (version 2020.2; Biomatters Ltd., Auckland, New Zealand) submitted in the NCBI GenBank ® database, compared to each other and the selected sequences from the world and aligned using Clustal W Multiple Sequence Alignment Program (UCD, Dublin, Ireland). .. 18 Phylogenetic trees were constructed for the all G gene sequences of Iran and selected sequences from the world with Neighbor-joining method provided in MEGA Software (version 7.0; Biodesign Institute, Tempe, USA). ..

    Article Title: Encapsulated Bacillus sp. THPS1, a novel thermophilic probiotic, enhances productivity and metabolic health in laying hens
    Article Snippet: The obtained nucleotide sequences were compared with those available in the GenBank database using the BLASTN program of the National Center for Biotechnology Information (NCBI) ( http://www.ncbi.nih.gov/ ). .. Subsequently, DNA sequences of similar length were aligned to classify homologous genes, and phylogenetic analysis of the 16S rRNA gene was performed using MEGA software (v.12; Molecular Evolutionary Genetics Analysis, Center for Evolutionary Medicine and Informatics, The Biodesign Institute, USA). ..

    Article Title: Encapsulated Bacillus sp. THPS1, a novel thermophilic probiotic, enhances productivity and metabolic health in laying hens.
    Article Snippet: The obtained nucleotide sequences were compared with those available in the GenBank database using the BLASTN program of the National Center for Biotechnology Information (NCBI) (http://www.ncbi.nih.gov/). .. Subsequently, DNA sequences of similar length were aligned to classify homologous genes, and phylogenetic analysis of the 16S rRNA gene was performed using MEGA software (v.12; Molecular Evolutionary Genetics Analysis, Center for Evolutionary Medicine and Informatics, The Biodesign Institute, USA). ..

    Article Title: Production of Lanhouin—A Fermented Catfish (Clarias gariepinus) Using the Selected Lactiplantibacillus pentosus Probiotic Strain
    Article Snippet: The amplified fragments were sequenced using the Sanger method in the Spectrum Compact CE System (Promega, Madison, WI, USA). .. The nucleotide sequences were aligned with the available sequences in the BLASTn (Basic Local Alignment Search Tool nucleotide) database through NCBI blasting (https://blast.ncbi.nlm.nih.gov/Blast.cgi accessed on 4 December 2024) and using MEGA software (version 11.0; Biodesign Institute, Tempe, AZ, USA, Acession no: OK325938.1; RID: N3VUW1MC016) to determine the species of the bacterial strain [63]. ..

    Article Title: Genotyping and phylogenetic analysis of Mannheimia haemolytica isolates from cattle and buffaloes of West Azerbaijan, Iran
    Article Snippet: .. Phylogenetic analyses were performed using concatenated sequences of the seven MLST loci with MEGA Software (version 11.0; Biodesign Institute, Tempe, USA) to explore the genetic relationships among the M. haemolytica isolates. ..

    Construct:

    Article Title: Sheep-Derived Lactobacillus johnsonii M5 Enhances Immunity and Antioxidant Capacity, Alleviates Diarrhea, and Improves Intestinal Health in Early-Weaned Lambs.
    Article Snippet: Sequence similarity values were identified using the BLAST tool version 2.2.26 of the National Center for Biotechnology Information (NCBI, Rockville, MD, USA). .. A phylogenetic tree for nucleotide sequences was constructed based on 16S rRNA gene sequences using MEGA software version 7.0 (The Biodesign Institute, Tempe, AZ, USA). ..

    Article Title: Molecular epizootiology of bovine ephemeral fever virus in Iran during 2015 to 2022
    Article Snippet: The obtained sequences were assembled using Geneious software (version 2020.2; Biomatters Ltd., Auckland, New Zealand) submitted in the NCBI GenBank ® database, compared to each other and the selected sequences from the world and aligned using Clustal W Multiple Sequence Alignment Program (UCD, Dublin, Ireland). .. 18 Phylogenetic trees were constructed for the all G gene sequences of Iran and selected sequences from the world with Neighbor-joining method provided in MEGA Software (version 7.0; Biodesign Institute, Tempe, USA). ..



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    The EVR1 gene family in Arabidopsis. A, Phylogenetic analysis of EVR1 and EVR1L proteins from Arabidopsis, Glycine max, Oryza sativa, Zea mays, Physcomitrella patens, Chlamydomonas reinhardtii, and Saccharomyces cerevisiae. Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the <t>MEGA6</t> program (Tamura et al., 2013). B, Gene structure analysis of EVR1 and EVR1L1. Gene models were drawn as in Fig. 2A. The numbers of coding nucleotides in each exon were marked. C, An alignment of amino acid sequences of EVR1 and EVR1L1. The alignment was generated by the software ClustalW2 (Larkin et al., 2007).
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    The EVR1 gene family in Arabidopsis. A, Phylogenetic analysis of EVR1 and EVR1L proteins from Arabidopsis, Glycine max, Oryza sativa, Zea mays, Physcomitrella patens, Chlamydomonas reinhardtii, and Saccharomyces cerevisiae. Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the MEGA6 program (Tamura et al., 2013). B, Gene structure analysis of EVR1 and EVR1L1. Gene models were drawn as in Fig. 2A. The numbers of coding nucleotides in each exon were marked. C, An alignment of amino acid sequences of EVR1 and EVR1L1. The alignment was generated by the software ClustalW2 (Larkin et al., 2007).

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    Figure Lengend Snippet: The EVR1 gene family in Arabidopsis. A, Phylogenetic analysis of EVR1 and EVR1L proteins from Arabidopsis, Glycine max, Oryza sativa, Zea mays, Physcomitrella patens, Chlamydomonas reinhardtii, and Saccharomyces cerevisiae. Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the MEGA6 program (Tamura et al., 2013). B, Gene structure analysis of EVR1 and EVR1L1. Gene models were drawn as in Fig. 2A. The numbers of coding nucleotides in each exon were marked. C, An alignment of amino acid sequences of EVR1 and EVR1L1. The alignment was generated by the software ClustalW2 (Larkin et al., 2007).

    Article Snippet: Proteins sequences were obtained from the National Center for Biotechnology Information and the phylogenetic tree was constructed with the MEGA6 program ( Tamura et al., 2013 ).

    Techniques: Construct, Generated, Software