Recombinant:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Article Title: High-fat diet increases circulating palmitic acid produced by gut Bacteroides thetaiotaomicron to promote thrombosis
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse anti-human CD41 antibody (PE) ZEN BIO Cat#790353; RRID: AB_3668780 Mouse anti-human CD62P antibody (FITC) Biolegend Cat#304904; RRID: AB_314476 Bacterial and virus strains Bacteroides thetaiotaomicron BNCC BNCC354380 Bacteroides fragilis BNCC BNCC336948 Bacteroides ovatus BNCC BNCC359491 Lactobacillus reuteri BNCC BNCC337178 Lactobacillus johnsonii BNCC BNCC135265 Escherichia coli ATCC ATCC8739 Chemicals, peptides, and recombinant proteins L-cysteine Macklin L804954-500g; CAS: 52-90-4 Hemoglobin chloride BBI A602521-0025; CAS: 16009-13-5 Palmitic acid MedChemExpress HY-N0830; CAS: 57-10-3 Palmitoleic acid MedChemExpress HY-W011873; CAS: 373-49-9 Myristic acid MedChemExpress HY-N2041; CAS: 544-63-8 Oleic acid MedChemExpress HY-N1446; CAS: 112-80-1 Elaidic acid MedChemExpress HY-113016; CAS: 112-79-8 BHI medium HKM 028360 MRS medium HKM 027312 LB medium BBI A600893-0032 23-gauge needle BD Biosciences 302008 Kimwipe Kimberly-Clark 34155 30-gauge needle BD Biosciences 305128 Human activated protein C Enzymeresearch APC Human α-Thrombin Enzymeresearch HT 1002a Human kallikrein Enzymeresearch HPKa 1303 Human Factor VIIa Enzymeresearch HFVIIa Human Factor IXaβ Enzymeresearch HFIXa 1080 Human Factor Xa Enzymeresearch HFXa 1011 Human Factor XIa Enzymeresearch HFXIa 1111a Human Plasmin Enzymeresearch HPlasmin Tissue plasminogen activator (tPA) MedChemExpress HY-P71051 Urokinase-type plasminogen activator (uPA) MedChemExpress HY-P71050 S-2366 CHROMOGENIX S-2366 S-2288 CHROMOGENIX S-2288 S-2222 CHROMOGENIX S-2222 S-2302 CHROMOGENIX S-2302 S-2238 CHROMOGENIX S-2238 Human Factor VIIa substrate Sigma-Aldrich SCP0248 Human Native Factor Va Abcam ab62415 Gradient gel Epizyme LK213 pGlu-Pro-Arg-MNA monoacetate MedChemExpress HY-P0022A; CAS:2070009-26-4 (Continued on next page) e1 Cell Reports Medicine 6, 102260, August 19, 2025 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER CM5 sensor chip Cytiva 29104988 Bovine serum albumin Biofroxx 4240GR500 Human prothrombin Enzymeresearch HP 1002 Human tissue factor Sino Biological 13133-H08H Z-Gly-Gly-Arg-AMC MedChemExpress HY-P0019A; CAS:66216-78-2 Human thrombomodulin Sino Biological 11864-h08h Ampicillin Macklin A830931-100g; CAS:69-53-4 Vancomycin Macklin V871983-5g; CAS:1404-90-6 Kanamycin sulfate Macklin K812216-100g; CAS:25389-94-0 Metronidazole Macklin M813526-500g; CAS:443-48-1 TRIzol Invitrogen 15596018CN Triphenyl-tetrazolium chloride (TTC) BioFroxx 2273GR025; CAS: 298-96-4 RIPA Sigma-Aldrich R0278 Protease inhibitor cocktail MedChemExpress HY-K0010 Phosphatase inhibitor cocktail II MedChemExpress HY-K0022 Hesperidin MedChemExpress HY-15337; CAS:520-26-3 Staining solution GenScript M00548-1C Destaining solution GenScript M00549 Critical commercial assays Protocol Phusion® High-Fidelity PCR Master Mix with HF Buffer New England Biolabs M0531L QIAquick Gel Extraction Kit Qiagen 28704 TruSeq® DNA PCR-Free Sample Preparation Kit Illumina 20041794 TIANamp Stool DNA Kit TIANGEN DP328 BlasTaqTM 2X qPCR MasterMix kit abm G891 Activated partial thromboplastin time (APTT) kit Yuanye Bio-Technology R22080-100T GENMED prothrombin time (PT) kit Bioworld GMS10176 All-In-One 5X RT MasterMix kit abm G592 ELISA Kit for Creatine Kinase MB Isoenzyme (CKMB) USCN SEA479Mu ELISA Kit for Cardiac Troponin I (cTnI) USCN SEA478Mu ELISA Kit for Creatine Kinase (CK) USCN SEA109Mu ELISA Kit for Lactate Dehydrogenase (LDH) USCN SEB864Mu Deposited data 16S rRNA sequencing data Zenodo and National Center of Biotechnology Information (NCBI) Zenodo [https://doi.org/10.5281/zenodo.
Staining:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Magnetic Beads:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Sequencing:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Modification:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Fat:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Acid Assay:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
ATP Assay:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Knockdown:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Multiple Displacement Amplification:Article Title: STBD1 mediates the crosstalk between glycogen and lipid droplets in clear cell renal cell carcinoma.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, peptides, and recombinant proteins Biotin Sigma-Aldrich Cat# B4639 Dithiothreitol Sigma-Aldrich Cat# 43816 Iodoacetamide Sigma-Aldrich Cat# I1149 BODIPY 493/503 Invitrogen Cat# D3922 2-NBDG Invitrogen Cat# N13195 BODIPY 558/568 C12 Invitrogen Cat# D3835 BODIPY 581/591 C11 Invitrogen Cat# D3861 LysoTracker Deep Red Invitrogen Cat# L12492 ER-Tracker Green Beyotime Cat# C1042S Hoechst 33342 Beyotime Cat# C1028 DAPI Solarbio Cat# C0060 ProLong Gold Antifade Mountant Invitrogen Cat# P36934 Myristic acid MedChemExpress Cat# HY-N2041 Alkynyl myristic acid MedChemExpress Cat# HY-140335 Biotin-azide MedChemExpress Cat# HY-129832 Tris(2-carboxyethyl)phosphine Thermo Scientific Cat# 77720 Tris(benzyltriazolylmethyl)amine MedChemExpress Cat# HY-116677 SYTOX Green Nucleic Acid Stain Mkbio Cat# MX4228 NMT inhibitor DDD85646 MedChemExpress Cat# HY-103056 Oleic acid MedChemExpress Cat# HY-N1446 HRP-labeled streptavidin Proteintech Cat# SA00001-0 Streptavidin magnetic beads Thermo Scientific Cat# 88817 Ferroptosis activator RSL3 MedChemExpress Cat# HY-100218A Sequencing Grade Modified Trypsin Promega Cat# V5117 Critical commercial assays Triglyceride Content Assay Kit Applygen Cat# E1013 Total Cholesterol Content Assay Kit Applygen Cat# E1015 Glycogen Content Assay Kit Solarbio Cat# BC0340 Free Fat Acid Assay Kit Abbkine Cat# KTB2230 ATP Assay Kit Beyotime Cat# S0027 Deposited data Clinical samples proteome dataset This paper iProX: PXD056124 LD proteome dataset This paper PRIDE: PXD048174 STBD1 knockdown quantitative proteome dataset This paper PRIDE: PXD047984 Experimental models: Cell lines Human RCC4 BLUEFBIO Cat# BFN60808420; RRID:CVCL_0498 Human A498 BLUEFBIO Cat# BFN60700271; RRID:CVCL_1056 Human Caki-1 BLUEFBIO Cat# BFN60700344; RRID:CVCL_0234 Human 786-O BLUEFBIO Cat# BFN60700343; RRID:CVCL_1051 Human ACHN BLUEFBIO Cat# BFN60700433; RRID:CVCL_1067 Human HKC BLUEFBIO Cat# BFN60700260; RRID:CVCL_WZ51 Human MDA-MB-231 Laboratory of Kangdong Liu RRID:CVCL_0062 Human A549 Laboratory of Kangdong Liu RRID:CVCL_0023 Human Hela Laboratory of Kangdong Liu RRID:CVCL_0030 Human Huh7 Laboratory of Kangdong Liu RRID:CVCL_0336 Human BGC-823 Laboratory of Jia Li RRID:CVCL_3360 (Continued on next page) 20 Cell Reports 44, 116429, October 28, 2025 ..
Virus:Article Title: High-fat diet increases circulating palmitic acid produced by gut Bacteroides thetaiotaomicron to promote thrombosis
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Mouse anti-human CD41 antibody (PE) ZEN BIO Cat#790353; RRID: AB_3668780 Mouse anti-human CD62P antibody (FITC) Biolegend Cat#304904; RRID: AB_314476 Bacterial and virus strains Bacteroides thetaiotaomicron BNCC BNCC354380 Bacteroides fragilis BNCC BNCC336948 Bacteroides ovatus BNCC BNCC359491 Lactobacillus reuteri BNCC BNCC337178 Lactobacillus johnsonii BNCC BNCC135265 Escherichia coli ATCC ATCC8739 Chemicals, peptides, and recombinant proteins L-cysteine Macklin L804954-500g; CAS: 52-90-4 Hemoglobin chloride BBI A602521-0025; CAS: 16009-13-5 Palmitic acid MedChemExpress HY-N0830; CAS: 57-10-3 Palmitoleic acid MedChemExpress HY-W011873; CAS: 373-49-9 Myristic acid MedChemExpress HY-N2041; CAS: 544-63-8 Oleic acid MedChemExpress HY-N1446; CAS: 112-80-1 Elaidic acid MedChemExpress HY-113016; CAS: 112-79-8 BHI medium HKM 028360 MRS medium HKM 027312 LB medium BBI A600893-0032 23-gauge needle BD Biosciences 302008 Kimwipe Kimberly-Clark 34155 30-gauge needle BD Biosciences 305128 Human activated protein C Enzymeresearch APC Human α-Thrombin Enzymeresearch HT 1002a Human kallikrein Enzymeresearch HPKa 1303 Human Factor VIIa Enzymeresearch HFVIIa Human Factor IXaβ Enzymeresearch HFIXa 1080 Human Factor Xa Enzymeresearch HFXa 1011 Human Factor XIa Enzymeresearch HFXIa 1111a Human Plasmin Enzymeresearch HPlasmin Tissue plasminogen activator (tPA) MedChemExpress HY-P71051 Urokinase-type plasminogen activator (uPA) MedChemExpress HY-P71050 S-2366 CHROMOGENIX S-2366 S-2288 CHROMOGENIX S-2288 S-2222 CHROMOGENIX S-2222 S-2302 CHROMOGENIX S-2302 S-2238 CHROMOGENIX S-2238 Human Factor VIIa substrate Sigma-Aldrich SCP0248 Human Native Factor Va Abcam ab62415 Gradient gel Epizyme LK213 pGlu-Pro-Arg-MNA monoacetate MedChemExpress HY-P0022A; CAS:2070009-26-4 (Continued on next page) e1 Cell Reports Medicine 6, 102260, August 19, 2025 Article ll OPEN ACCESS .. REAGENT or RESOURCE SOURCE IDENTIFIER CM5 sensor chip Cytiva 29104988 Bovine serum albumin Biofroxx 4240GR500 Human prothrombin Enzymeresearch HP 1002 Human tissue factor Sino Biological 13133-H08H Z-Gly-Gly-Arg-AMC MedChemExpress HY-P0019A; CAS:66216-78-2 Human thrombomodulin Sino Biological 11864-h08h Ampicillin Macklin A830931-100g; CAS:69-53-4 Vancomycin Macklin V871983-5g; CAS:1404-90-6 Kanamycin sulfate Macklin K812216-100g; CAS:25389-94-0 Metronidazole Macklin M813526-500g; CAS:443-48-1 TRIzol Invitrogen 15596018CN Triphenyl-tetrazolium chloride (TTC) BioFroxx 2273GR025; CAS: 298-96-4 RIPA Sigma-Aldrich R0278 Protease inhibitor cocktail MedChemExpress HY-K0010 Phosphatase inhibitor cocktail II MedChemExpress HY-K0022 Hesperidin MedChemExpress HY-15337; CAS:520-26-3 Staining solution GenScript M00548-1C Destaining solution GenScript M00549 Critical commercial assays Protocol Phusion® High-Fidelity PCR Master Mix with HF Buffer New England Biolabs M0531L QIAquick Gel Extraction Kit Qiagen 28704 TruSeq® DNA PCR-Free Sample Preparation Kit Illumina 20041794 TIANamp Stool DNA Kit TIANGEN DP328 BlasTaqTM 2X qPCR MasterMix kit abm G891 Activated partial thromboplastin time (APTT) kit Yuanye Bio-Technology R22080-100T GENMED prothrombin time (PT) kit Bioworld GMS10176 All-In-One 5X RT MasterMix kit abm G592 ELISA Kit for Creatine Kinase MB Isoenzyme (CKMB) USCN SEA479Mu ELISA Kit for Cardiac Troponin I (cTnI) USCN SEA478Mu ELISA Kit for Creatine Kinase (CK) USCN SEA109Mu ELISA Kit for Lactate Dehydrogenase (LDH) USCN SEB864Mu Deposited data 16S rRNA sequencing data Zenodo and National Center of Biotechnology Information (NCBI) Zenodo [https://doi.org/10.5281/zenodo.
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