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scanarray microarray acquisition software  (Lumonics Inc)

 
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    Structured Review

    Lumonics Inc scanarray microarray acquisition software
    Each row in the diagram represents a gene and each column a tumor sample. The color saturation represents differences in gene expression across the tumor samples; red indicates expression higher than the median (black), and green indicates expression lower than the median. The color intensity indicates degree of gene regulation ( A ). Fold expression of the GOIs with respect to tumor histology, as detected by <t>microarray</t> analysis ( B ).
    Scanarray Microarray Acquisition Software, supplied by Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gsi-lumonics+scanarray+5000+microarray+scanner/scanarray+microarray+acquisition+software/pmc03071699-105-4-9
    Average 90 stars, based on 1 article reviews
    scanarray microarray acquisition software - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "Spotlight on Differentially Expressed Genes in Urinary Bladder Cancer"

    Article Title: Spotlight on Differentially Expressed Genes in Urinary Bladder Cancer

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0018255

    Each row in the diagram represents a gene and each column a tumor sample. The color saturation represents differences in gene expression across the tumor samples; red indicates expression higher than the median (black), and green indicates expression lower than the median. The color intensity indicates degree of gene regulation ( A ). Fold expression of the GOIs with respect to tumor histology, as detected by microarray analysis ( B ).
    Figure Legend Snippet: Each row in the diagram represents a gene and each column a tumor sample. The color saturation represents differences in gene expression across the tumor samples; red indicates expression higher than the median (black), and green indicates expression lower than the median. The color intensity indicates degree of gene regulation ( A ). Fold expression of the GOIs with respect to tumor histology, as detected by microarray analysis ( B ).

    Techniques Used: Expressing, Microarray

    Related Articles

    Microarray:

    Article Title: Dual Mechanisms of Metabolism and Gene Expression of the CCRF-CEM Leukemia Cells under Glucocorticoid Treatment
    Article Snippet: .. Microarray image acquisition was performed with the Scan Array microarray acquisition software (GSI Lumonics, Bedford, MA, USA) and raw data extraction was performed with the ImaGene v.6.0 Software (BioDiscovery Inc., El Segundo, CA, USA). .. Data pre-processing was performed in Microsoft Excel ® and data processing was performed within the Matlab ® v.7.6.0 (The MathWorks Inc., Natick, MA, USA) computing environment, using the Bioinformatics Toolbox.

    Article Title: Differential and Common Signatures of miRNA Expression and Methylation in Childhood Central Nervous System Malignancies: An Experimental and Computational Approach
    Article Snippet: Slides were scanned with a microarray scanner (ScanArray 4000XL, Northville, MI, USA). .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, Northville, MI, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. .. The scanned images were further processed with the CodeLink Expression Analysis Software v5.0 from Amersham Biosciences (presently GE Health Care Inc., Chicago, IL, USA).

    Article Title: Overexpression of human apolipoprotein B-100 induces severe neurodegeneration in transgenic mice.
    Article Snippet: Recent studies showed correlation between increased serum apolipoprotein B-100 (apoB-100) level and Alzheimer’s disease.. To reveal the possible role of apoB-100 in neurodegeneration, we analyzed the serum lipoprotein and cerebral protein profiles, amyloid plaque formation, apoptosis and brain morphology of transgenic mice overexpressing the human apoB-100 protein.. Serum lipoprotein profile showed significant increase of the plasma triglyceride level, while no alteration in total cholesterol was detected.

    Article Title: Spotlight on differentially expressed genes in urinary bladder cancer.
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. ..

    Article Title: AUTEN-67, an autophagy-enhancing drug candidate with potent antiaging and neuroprotective effects.
    Article Snippet: .. The slides were scanned with a ScanArray Lite (GSI Lumonics, Billerica, USA) microarray scanner at 633 nm. ..

    Article Title: Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). .. Image analysis was performed with the ImaGene ® 6.0 software (Biodiscovery Inc., USA).

    Article Title: Prednisolone exerts late mitogenic and biphasic effects on resistant acute lymphoblastic leukemia cells: Relation to early gene expression.
    Article Snippet: Resistance or sensitivity to glucocorticoids is considered to be of crucial importance for disease prognosis in childhood acute lymphoblastic leukemia.. Prednisolone exerted a delayed biphasic effect on the resistant CCRF-CEM leukemic cell line, necrotic at low doses and apoptotic at higher doses.. At low doses, prednisolone exerted a pre-dominant mitogenic effect despite its induction on total cell death, while at vailable online 18 May 2009

    Article Title: Spotlight on Differentially Expressed Genes in Urinary Bladder Cancer
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. ..

    Software:

    Article Title: Dual Mechanisms of Metabolism and Gene Expression of the CCRF-CEM Leukemia Cells under Glucocorticoid Treatment
    Article Snippet: .. Microarray image acquisition was performed with the Scan Array microarray acquisition software (GSI Lumonics, Bedford, MA, USA) and raw data extraction was performed with the ImaGene v.6.0 Software (BioDiscovery Inc., El Segundo, CA, USA). .. Data pre-processing was performed in Microsoft Excel ® and data processing was performed within the Matlab ® v.7.6.0 (The MathWorks Inc., Natick, MA, USA) computing environment, using the Bioinformatics Toolbox.

    Article Title: Differential and Common Signatures of miRNA Expression and Methylation in Childhood Central Nervous System Malignancies: An Experimental and Computational Approach
    Article Snippet: Slides were scanned with a microarray scanner (ScanArray 4000XL, Northville, MI, USA). .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, Northville, MI, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. .. The scanned images were further processed with the CodeLink Expression Analysis Software v5.0 from Amersham Biosciences (presently GE Health Care Inc., Chicago, IL, USA).

    Article Title: Spotlight on differentially expressed genes in urinary bladder cancer.
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. ..

    Article Title: Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). .. Image analysis was performed with the ImaGene ® 6.0 software (Biodiscovery Inc., USA).

    Article Title: Prednisolone exerts late mitogenic and biphasic effects on resistant acute lymphoblastic leukemia cells: Relation to early gene expression.
    Article Snippet: Resistance or sensitivity to glucocorticoids is considered to be of crucial importance for disease prognosis in childhood acute lymphoblastic leukemia.. Prednisolone exerted a delayed biphasic effect on the resistant CCRF-CEM leukemic cell line, necrotic at low doses and apoptotic at higher doses.. At low doses, prednisolone exerted a pre-dominant mitogenic effect despite its induction on total cell death, while at vailable online 18 May 2009

    Article Title: Spotlight on Differentially Expressed Genes in Urinary Bladder Cancer
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. ..

    Extraction:

    Article Title: Dual Mechanisms of Metabolism and Gene Expression of the CCRF-CEM Leukemia Cells under Glucocorticoid Treatment
    Article Snippet: .. Microarray image acquisition was performed with the Scan Array microarray acquisition software (GSI Lumonics, Bedford, MA, USA) and raw data extraction was performed with the ImaGene v.6.0 Software (BioDiscovery Inc., El Segundo, CA, USA). .. Data pre-processing was performed in Microsoft Excel ® and data processing was performed within the Matlab ® v.7.6.0 (The MathWorks Inc., Natick, MA, USA) computing environment, using the Bioinformatics Toolbox.

    Generated:

    Article Title: Differential and Common Signatures of miRNA Expression and Methylation in Childhood Central Nervous System Malignancies: An Experimental and Computational Approach
    Article Snippet: Slides were scanned with a microarray scanner (ScanArray 4000XL, Northville, MI, USA). .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, Northville, MI, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. .. The scanned images were further processed with the CodeLink Expression Analysis Software v5.0 from Amersham Biosciences (presently GE Health Care Inc., Chicago, IL, USA).

    Article Title: Spotlight on differentially expressed genes in urinary bladder cancer.
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. ..

    Article Title: Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). .. Image analysis was performed with the ImaGene ® 6.0 software (Biodiscovery Inc., USA).

    Article Title: Prednisolone exerts late mitogenic and biphasic effects on resistant acute lymphoblastic leukemia cells: Relation to early gene expression.
    Article Snippet: Resistance or sensitivity to glucocorticoids is considered to be of crucial importance for disease prognosis in childhood acute lymphoblastic leukemia.. Prednisolone exerted a delayed biphasic effect on the resistant CCRF-CEM leukemic cell line, necrotic at low doses and apoptotic at higher doses.. At low doses, prednisolone exerted a pre-dominant mitogenic effect despite its induction on total cell death, while at vailable online 18 May 2009

    Article Title: Spotlight on Differentially Expressed Genes in Urinary Bladder Cancer
    Article Snippet: .. Images were generated with ScanArray microarray acquisition software (GSI Lumonics, USA). cRNAs from three experimental setups were used in single experiments with internal spikes as controls. ..



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