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Broad Institute Inc java applet gsea software v2.07
Java Applet Gsea Software V2.07, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+java+desktop+software+application/java+based+gsea+program/pmc04144468-69-10-17
Average 90 stars, based on 1 article reviews
java applet gsea software v2.07 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Gene Expression:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Infection:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Immunofluorescence:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Staining:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

RNA Sequencing:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Control:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Transfection:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Binding Assay:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Expressing:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Quantitative RT-PCR:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Modification:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Luciferase:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Activity Assay:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Flow Cytometry:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

FACS:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Recombinant:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Software:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Isolation:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Encapsulation:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Genome Wide:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

CRISPR:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Fluorescence:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Imaging:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Confocal Microscopy:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Two Tailed Test:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).

Phospho-proteomics:

Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence
Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application.

Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair
Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ).

Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Java GSEA implementation version 3.0 provided by the Broad Institute ( http://software.broadinstitute.org/gsea/index.jsp ) as described previously.

Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis
Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute.

Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy
Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute).



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METTL3 expression was associated with altered glucose metabolism in HCC cases. A, Illustration of enzymes involved the key steps in glucose metabolic flux. B, Heatmap with cluster analysis of METT3 expression and glucose metabolism related genes revealed a co‐expression trend between METTL3 and genes involved in glycolysis. C, D, <t>GSEA</t> plot of two predefined gene sets based on the METTL3 expression revealed genes involved in normal glucose metabolism were significantly enriched in HCC cases with lower METTL3 expression, which suggesting that normal glucose metabolism was preserved in these cases. E, A heatmap displaying the Spearman rank correlation test results which implied positive correlation between METTL3 expression and glycolysis‐related genes and negative correlation between METTL3 expression and glycogenesis‐related genes, the bar indicates the value of spearman correlation coefficient
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(A) Principal component analysis of monocyte- and fibroblast-specific gene expression. (B) Heatmap diagram of monocyte- and fibroblast-specific gene expression. (C–E) The enrichment plot in the monocytic gene set of KDOE, OE-only, and KD-only. (F–H) Gene set enrichment analysis in the fibroblastic gene set of KDOE, KD-only, and OE-only.
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METTL3 expression was associated with altered glucose metabolism in HCC cases. A, Illustration of enzymes involved the key steps in glucose metabolic flux. B, Heatmap with cluster analysis of METT3 expression and glucose metabolism related genes revealed a co‐expression trend between METTL3 and genes involved in glycolysis. C, D, GSEA plot of two predefined gene sets based on the METTL3 expression revealed genes involved in normal glucose metabolism were significantly enriched in HCC cases with lower METTL3 expression, which suggesting that normal glucose metabolism was preserved in these cases. E, A heatmap displaying the Spearman rank correlation test results which implied positive correlation between METTL3 expression and glycolysis‐related genes and negative correlation between METTL3 expression and glycogenesis‐related genes, the bar indicates the value of spearman correlation coefficient

Journal: Cancer Medicine

Article Title: METTL3 expression is associated with glycolysis metabolism and sensitivity to glycolytic stress in hepatocellular carcinoma

doi: 10.1002/cam4.2918

Figure Lengend Snippet: METTL3 expression was associated with altered glucose metabolism in HCC cases. A, Illustration of enzymes involved the key steps in glucose metabolic flux. B, Heatmap with cluster analysis of METT3 expression and glucose metabolism related genes revealed a co‐expression trend between METTL3 and genes involved in glycolysis. C, D, GSEA plot of two predefined gene sets based on the METTL3 expression revealed genes involved in normal glucose metabolism were significantly enriched in HCC cases with lower METTL3 expression, which suggesting that normal glucose metabolism was preserved in these cases. E, A heatmap displaying the Spearman rank correlation test results which implied positive correlation between METTL3 expression and glycolysis‐related genes and negative correlation between METTL3 expression and glycogenesis‐related genes, the bar indicates the value of spearman correlation coefficient

Article Snippet: Java GSEA Desktop Application software (V3.0, Broad Institute) was used.

Techniques: Expressing

Correlation between METTL3 expression and activity of mTORC1 activity. A, GSEA plot of mTOR signal pathway based on METTL3 expression levels in TCGA cases. B, HCC cell lines were treated with siRNA oligonucleotides or not, then the indicated proteins were detected by WB. (C‐G) The HCC cell lines were treated with rapamycin or co‐treated with siRNA oligonucleotides, for 48 h followed by immunoblotting for mTOR phosphorylation levels (C), glucose uptake assays in HCC cells Huh‐7 (D) and SMMC‐7721 (E), and lactate production assays in Huh‐7 cell line (F) and SMMC‐7721 cell line (G). H, I, Gene‐specific m6A‐IP‐qPCR results showing the relative methylation levels of five RNAs in the HCC cell lines treated with siRNA oligonucleotides compared to those normal control cells

Journal: Cancer Medicine

Article Title: METTL3 expression is associated with glycolysis metabolism and sensitivity to glycolytic stress in hepatocellular carcinoma

doi: 10.1002/cam4.2918

Figure Lengend Snippet: Correlation between METTL3 expression and activity of mTORC1 activity. A, GSEA plot of mTOR signal pathway based on METTL3 expression levels in TCGA cases. B, HCC cell lines were treated with siRNA oligonucleotides or not, then the indicated proteins were detected by WB. (C‐G) The HCC cell lines were treated with rapamycin or co‐treated with siRNA oligonucleotides, for 48 h followed by immunoblotting for mTOR phosphorylation levels (C), glucose uptake assays in HCC cells Huh‐7 (D) and SMMC‐7721 (E), and lactate production assays in Huh‐7 cell line (F) and SMMC‐7721 cell line (G). H, I, Gene‐specific m6A‐IP‐qPCR results showing the relative methylation levels of five RNAs in the HCC cell lines treated with siRNA oligonucleotides compared to those normal control cells

Article Snippet: Java GSEA Desktop Application software (V3.0, Broad Institute) was used.

Techniques: Expressing, Activity Assay, Western Blot, Phospho-proteomics, Methylation, Control

Up- and downregulated metabolic gene sets in KO compared to WT based on the  GSEA  method.

Journal: Scientific Reports

Article Title: Transcriptome analysis suggests a compensatory role of the cofactors coenzyme A and NAD + in medium-chain acyl-CoA dehydrogenase knockout mice

doi: 10.1038/s41598-019-50758-0

Figure Lengend Snippet: Up- and downregulated metabolic gene sets in KO compared to WT based on the GSEA method.

Article Snippet: Gene-set enrichment analysis (GSEA) was performed according to Subramanian et al . 2005 using the GSEA desktop Java application software (version 2.2.4, Broad Institute).

Techniques: Phospho-proteomics

Up- and downregulated metabolic gene sets in KO compared to WT based on the Alternative  GSEA  method.

Journal: Scientific Reports

Article Title: Transcriptome analysis suggests a compensatory role of the cofactors coenzyme A and NAD + in medium-chain acyl-CoA dehydrogenase knockout mice

doi: 10.1038/s41598-019-50758-0

Figure Lengend Snippet: Up- and downregulated metabolic gene sets in KO compared to WT based on the Alternative GSEA method.

Article Snippet: Gene-set enrichment analysis (GSEA) was performed according to Subramanian et al . 2005 using the GSEA desktop Java application software (version 2.2.4, Broad Institute).

Techniques:

(A) Principal component analysis of monocyte- and fibroblast-specific gene expression. (B) Heatmap diagram of monocyte- and fibroblast-specific gene expression. (C–E) The enrichment plot in the monocytic gene set of KDOE, OE-only, and KD-only. (F–H) Gene set enrichment analysis in the fibroblastic gene set of KDOE, KD-only, and OE-only.

Journal: PLoS ONE

Article Title: Asymmetric Regulation of Peripheral Genes by Two Transcriptional Regulatory Networks

doi: 10.1371/journal.pone.0160459

Figure Lengend Snippet: (A) Principal component analysis of monocyte- and fibroblast-specific gene expression. (B) Heatmap diagram of monocyte- and fibroblast-specific gene expression. (C–E) The enrichment plot in the monocytic gene set of KDOE, OE-only, and KD-only. (F–H) Gene set enrichment analysis in the fibroblastic gene set of KDOE, KD-only, and OE-only.

Article Snippet: We used the java GSEA Desktop Application software from the Broad Institute Gene Set Enrichment Analysis website ( http://software.broadinstitute.org/gsea/downloads.jsp ).

Techniques: Gene Expression