java gsea implementation version 3.0 (Broad Institute Inc)
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Broad Institute Inc
java gsea implementation version 3.0
Java Gsea Implementation Version 3.0, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+java+desktop+program/java+based+gsea+program/pmc06291835-132-11-19
Average 90 stars, based on 1 article reviews
Java Gsea Implementation Version 3.0, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/gsea+java+desktop+program/java+based+gsea+program/pmc06291835-132-11-19
Average 90 stars, based on 1 article reviews
java gsea implementation version 3.0 - by Bioz Stars,
2026-09
90/100 stars
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1) Product Images from "Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC"
Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC
Journal: The Journal of surgical research
doi: 10.1016/j.jss.2018.11.008
Figure Legend Snippet: Summary of gene set enrichment analysis (GSEA) in hallmark gene sets
Techniques Used: Phospho-proteomics
Related Articles
Gene Expression:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Infection:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Immunofluorescence:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Staining:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). RNA Sequencing:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Control:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Transfection:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Binding Assay:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Expressing:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Quantitative RT-PCR:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Modification:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Luciferase:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Activity Assay:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Flow Cytometry:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). FACS:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Recombinant:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Software:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Isolation:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Encapsulation:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Genome Wide:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). CRISPR:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Fluorescence:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Imaging:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Confocal Microscopy:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Two Tailed Test:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). Phospho-proteomics:Article Title: Tissue Determinants of Human NK Cell Development, Function, and Residence Article Snippet: To test for enrichment of tissue-residence gene signature, genes ranked by absolute value of log 2 -fold change between CD56 bright CD16 − and CD56 dim CD16 + NK cells was used as input to run pre-ranked GSEA using the Broad Institute GSEA Java web application. Article Title: Combined use of magnetic microbeads for endothelial cell isolation and enhanced cell engraftment in myocardial repair Article Snippet: Gene Set Enrichment Analysis (GSEA) was performed by using the pre-ranked gene list method implemented in the java-based GSEA program and the C2 and C5 curated molecular signature database both provided by the BROAD institute ( http://www.broadinstitute.org/gsea/index.jsp ). Article Title: Low DMT1 expression associates with increased oxidative phosphorylation and early recurrence in HCC Article Snippet: GSEA GSEA was performed comparing DMT1 high and low patients utilizing the Article Title: Immune profiling of experimental murine mastitis reveals conserved response to mammary pathogenic Escherichia coli , Mycoplasma bovis , and Streptococcus uberis Article Snippet: Gene Set Enrichment Analysis (GSEA) ( ) was done using the java-based GSEA program and curated molecular signature database (MSigDB) both provided by the BROAD institute. Article Title: Efficient blockade of locally reciprocated tumor-macrophage signaling using a TAM-avid nanotherapy Article Snippet: Enrichment score and nominal P values were calculated from the GSEA Java Applet (Broad Institute). |
