Incubation:Article Title: Lysophosphatidic Acid Modulates TGF-β2-Induced Biological Phenotype in Human Conjunctival Fibroblasts
Article Snippet: .. Briefly, 4% paraformaldehyde-fixed 3D spheroids were incubated in 3% BSA in PBS for 3 h. After washing twice with PBS for 30 min each time, 3D spheroids were sequentially exposed to 1:200 dilution of primary antibodies, including an anti-human COL1 (#600-401-103-0.1, ROCKLAND Antibodies & Assays, Limerick, PA, USA), COL4 (#600-401-106S, ROCKLAND Antibodies & Assays, Limerick, PA, USA), COL6 (#009-001-108, ROCKLAND Antibodies & Assays, Limerick, PA, USA), and FN (#A-11, Santa Cruz Biotechnology, Inc., Dallas, TX, USA) rabbit antibody at 4 °C overnight. .. The 3D spheroids were then washed 3 times with PBS for 1 h each time and exposed to 1:1000 dilution of secondary antibodies, including a goat anti-rabbit IgG (488 nm, #A27034, Invitrogen, Waltham, MA, USA) with phalloidin (594 nm, 1:1000 dilution, #17466-45-4, Cayman Chemical, Ann Arbor, MI, USA) and DAPI (1:1000 dilution, #D523-10, DOJINDO, Osaka, Japan) for 3 h. Then, after mounting on ProLong Gold Antifade Mountant with a cover glass, immunofluorescent images were taken with a Nikon A1 confocal microscope using a ×20 air objective at a resolution of 1024 × 1024 pixels.
Article Title: Cytoplasmic retention of the DNA/RNA-binding protein FUS ameliorates organ fibrosis in mice
Article Snippet: .. Membranes were incubated with the following primary antibodies: rabbit anti-FUS/TLS (4885, Cell Signaling Technology), rabbit anti–histone H3 (9715, Cell Signaling Technology), mouse anti–α-tubulin (3873, Cell Signaling Technology), rat anti–collagen IV α2NC1 (7071, Chondrex), rabbit anti–collagen IV (600-401-106, Rockland), rabbit anti–collagen I (66948, Cell Signaling Technology), rabbit anti-desmin (ab15200, Abcam), mouse anti-TIMP1 (sc-s21734, Santa Cruz Biotechnology). .. IRDye fluorescent dyes (LI-COR Inc.) were used as secondary antibodies, and membranes were processed through a LI-COR Odyssey infrared imaging system.
Staining:Article Title: Cytoplasmic retention of the DNA/RNA-binding protein FUS ameliorates organ fibrosis in mice
Article Snippet: .. Paraffin sections were stained with mouse anti-FUS (sc-47711, Santa Cruz Biotechnology), rabbit anti-GFP (NB600-308, Novus Biological), rabbit anti–phospho-EGFR (Tyr1173; 4407, Cell Signaling Technology), or rabbit anti–collagen IV (600401106, Rockland) antibodies followed by Alexa Fluor 488 anti-mouse (A32723, Alexa Fluor) and Alexa Fluor 555 anti-rabbit (A21428, Alexa Fluor). .. Slides were then mounted using ProLong Gold Antifade Mountant with DAPI (P36931, Thermo Fisher Scientific).
Recombinant:Article Title: Engineering scalable vascularized kidney organoids for in vivo glomerular filtration with human endothelial integration.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Actin, α-Smooth Muscle - Cy3 conjugated antibody Sigma-Aldrich C6198, RRID: AB_476856 Beta III TUBULIN Millipore MAB1637, RRID: AB_2210524 CD146 Abcam ab75769, RRID: AB_2143375 CD31 Abcam ab9498, RRID: AB_307284 CDH1 Abcam ab11512, RRID: AB_298118 Collagen IV α5 (B51 and H53 clones) Shigei Medical Research Institute SGE-C451 (B51), RRID: AB_2924380 and SGE-C453 (H53) Collagen IV α1 Rockland 600-401-106S, RRID: AB_11183330 EHD3 Novus Biologicals 31896 Integrin alpha2 (EPR5788) GeneTex GTX63576 LTL Vector lab B-1325, RRID: AB_2336558 LTL-Alexa Fluor 647 Bioworld 21511594 MECA-32 BD Biosciences 553849 MEIS1 Active motif 39796 MEIS1/2/3 Santa cruz sc-101850, RRID: AB_2143143 NEPHRIN (NPHS1) PROGEN GP-N2, RRID: AB_2904121 PAX2 Biolegend 901001, RRID: AB_2565001 PDGFR-β R&D systems AF385, RRID: AB_355339 NPHS2 Abcam ab50339, RRID: AB_882097 PODXL R&D systems AF1658, RRID: AB_354920 SALL1 R&D systems PP-K9814-00, RRID: AB_1964373 SIX2 Proteintech 11562-1-AP, RRID: AB_2189084 WT1 Santa cruz sc-192, RRID: AB_632611 Chemicals, peptides, recombinant proteins, consumables StemFit® Basic02 Amsbio SFB-500 StemFit® Basic04 complete Amsbio SFB-504-CT LDEV-Free hESC-qualified Geltrex Life Technologies A1413302 AccutaseTM STEMCELL TECHNOLOGIES 07920 PBS Life Technologies 10010-023 24-well tissue culture plates TPP 92024 Y27632 TOCRIS 1254 FGF2 Peprotech 100-18B aRPMI1640 Life Technologies 12633-020 L-GlutaMAX Life Technologies 35050-061 CHIR99021 TOCRIS 4423 Dorsomorphin TOCRIS 3093 Activin R&D 338-AC-050 96-well, round-bottom, ultra-low attachment plates Corning 7007 Fig. 6 | Implantation of pre-vascularized human nephron sheets into mice facilitates size-selective filtration of LMW dextran via graft-host anastomosis of human andmurine capillaries. ..
Filtration:Article Title: Engineering scalable vascularized kidney organoids for in vivo glomerular filtration with human endothelial integration.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Anti-Actin, α-Smooth Muscle - Cy3 conjugated antibody Sigma-Aldrich C6198, RRID: AB_476856 Beta III TUBULIN Millipore MAB1637, RRID: AB_2210524 CD146 Abcam ab75769, RRID: AB_2143375 CD31 Abcam ab9498, RRID: AB_307284 CDH1 Abcam ab11512, RRID: AB_298118 Collagen IV α5 (B51 and H53 clones) Shigei Medical Research Institute SGE-C451 (B51), RRID: AB_2924380 and SGE-C453 (H53) Collagen IV α1 Rockland 600-401-106S, RRID: AB_11183330 EHD3 Novus Biologicals 31896 Integrin alpha2 (EPR5788) GeneTex GTX63576 LTL Vector lab B-1325, RRID: AB_2336558 LTL-Alexa Fluor 647 Bioworld 21511594 MECA-32 BD Biosciences 553849 MEIS1 Active motif 39796 MEIS1/2/3 Santa cruz sc-101850, RRID: AB_2143143 NEPHRIN (NPHS1) PROGEN GP-N2, RRID: AB_2904121 PAX2 Biolegend 901001, RRID: AB_2565001 PDGFR-β R&D systems AF385, RRID: AB_355339 NPHS2 Abcam ab50339, RRID: AB_882097 PODXL R&D systems AF1658, RRID: AB_354920 SALL1 R&D systems PP-K9814-00, RRID: AB_1964373 SIX2 Proteintech 11562-1-AP, RRID: AB_2189084 WT1 Santa cruz sc-192, RRID: AB_632611 Chemicals, peptides, recombinant proteins, consumables StemFit® Basic02 Amsbio SFB-500 StemFit® Basic04 complete Amsbio SFB-504-CT LDEV-Free hESC-qualified Geltrex Life Technologies A1413302 AccutaseTM STEMCELL TECHNOLOGIES 07920 PBS Life Technologies 10010-023 24-well tissue culture plates TPP 92024 Y27632 TOCRIS 1254 FGF2 Peprotech 100-18B aRPMI1640 Life Technologies 12633-020 L-GlutaMAX Life Technologies 35050-061 CHIR99021 TOCRIS 4423 Dorsomorphin TOCRIS 3093 Activin R&D 338-AC-050 96-well, round-bottom, ultra-low attachment plates Corning 7007 Fig. 6 | Implantation of pre-vascularized human nephron sheets into mice facilitates size-selective filtration of LMW dextran via graft-host anastomosis of human andmurine capillaries. ..
Bioprocessing:Article Title: Functionalized Cerium Oxide Nanoparticles Enhance Penetration into Melanoma Spheroids In Vivo through Angiogenesis
Article Snippet: .. Cells were blocked with BSA (1% w/v) in PBS for 16 h at 4 °C and then washed twice with PBS containing Tween‐20 (PBS‐T; 0.1% w/v) before the addition of either Rhodamine‐phalloidin (1:200 in PBS‐T; Thermo Fisher Scientific) at RT for 1 h in the dark and DAPI (1:1000, Thermo Fisher Scientific) for 30 min at RT or primary antibodies at RT for 2 h. Primary antibodies included mouse monoclonal antibodies against perlecan (2 mg mL −1 ; clone A74; AbCam) or collagen type IV (2 mg mL −1 ; clone Col94) or a rabbit polyclonal anti‐laminin antibody (Rockland). .. Cells were then incubated with either goat anti‐mouse Alexa Fluor 488 (1:500; Invitrogen) or goat anti‐rabbit Alexa Fluor 488 (1:500; Invitrogen) at RT for 1 h in the dark and counterstained with CellMask Deep red membrane stain (1:1000; Invitrogen) at RT for 1 h. Samples were washed twice with PBS‐T and a final rinse with PBS at 4 °C prior to imaging using a confocal microscope (IX70, Olympus or SP8, Leica).
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